Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Kockovaella_20imperatae_20[genbank_20GCA_5F002102565.1_202017-04-20] 38 sequences; 17,465,713 total letters Query= NC_028491.1 Length=98392 Score E Sequences producing significant alignments: (Bits) Value seq11 95.1 8e-15 >seq11 Length=169478 Score = 95.1 bits (104), Expect = 8e-15 Identities = 149/211 (71%), Gaps = 2/211 (1%) Strand=Plus/Plus Query 34497 CACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGCTCGTCTTC 34556 ||||||||| | || |||||| || ||||| || || || ||||| || | || || Sbjct 9975 CACCAAATGCAACGTAGACTCCTTCTGGATGTTGTAGTCGGAGAGTGTACGTCCATCCTC 10034 Query 34557 AAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCCTTGTCTGT 34616 |||||||||||||| || || | |||||||| || || || | ||||||||||| | Sbjct 10035 GAGTTGTTTACCGGCGAAAATGAGTCGCTGTTGATCAGGAGGAATACCCTCCTTGTC-CT 10093 Query 34617 GATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCACTTCCACGGTTATCGTTT 34675 || || |||| || | || ||||| ||| ||||||| || || || | Sbjct 10094 GAATCTTGCTTTTCACATTGTCGATGGTGTCGGATGACTCAACTTCCAAAGTGATGGTCT 10153 Query 34676 TACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 | || || || || |||||||| |||||||| Sbjct 10154 TGCCAGTCAAGGTCTTCACAAAGATCTGCAT 10184 Score = 91.5 bits (100), Expect = 9e-14 Identities = 137/192 (71%), Gaps = 2/192 (1%) Strand=Plus/Plus Query 34516 TCCTTTTGAATGTTATAATCTGAAAGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAAT 34575 ||||| || ||||| || || || || ||||| ||||||| ||||||||||| || || Sbjct 10222 TCCTTCTGGATGTTGTAGTCGGAGAGGGTTCGTCCGTCTTCGAGTTGTTTACCAGCGAAA 10281 Query 34576 ATTAAACGCTGTTGGTCCGGCGGCACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGAT 34635 || | |||||||| || || || | ||||||||||| ||| || | || ||| | Sbjct 10282 ATGAGTCGCTGTTGATCAGGAGGAATACCCTCCTTGTC-CTGAATCTTGCTCTTCACGTT 10340 Query 34636 -AAAATTGTGTCTTCGCTCTCCACTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCAC 34694 ||| || || | ||| ||||| | ||| || ||||| ||||| || || || || Sbjct 10341 GTCAATGGTATCGGAGGACTCGACTTCGAGGGTGATGGTTTTGCCGGTCAAAGTCTTGAC 10400 Query 34695 AAAAATCTGCAT 34706 || || ||||| Sbjct 10401 GAAGATTTGCAT 10412 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 314729454240854