Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Kockovaella_20imperatae_20[genbank_20GCA_5F002102565.1_202017-04-20] 38 sequences; 17,465,713 total letters Query= NC_029692.1 Length=362276 Score E Sequences producing significant alignments: (Bits) Value seq12 185 2e-41 seq11 143 6e-29 seq36 118 2e-21 >seq12 Length=1921170 Score = 185 bits (204), Expect = 2e-41 Identities = 158/195 (81%), Gaps = 0/195 (0%) Strand=Plus/Plus Query 210899 TCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCC 210958 ||| | ||| ||||||||||| ||||| || |||||||| || || | || || | ||| Sbjct 1262039 TCTCAAGACGAGGTGAAGAGTAGACTCCTTCTGGATGTTGTAGTCGGAGAGAGTTCGTCC 1262098 Query 210959 ATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTT 211018 |||||||| |||||| || || ||||| | |||||||| ||||| |||| ||||||||| Sbjct 1262099 ATCTTCCAACTGCTTTCCAGCAAAGATCAATCGTTGTTGATCAGGGGGAATTCCTTCCTT 1262158 Query 211019 GTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGAT 211078 |||||||||||| || || || ||||| ||||||||| |||||||||||| ||||| Sbjct 1262159 GTCCTGGATCTTAGACTTGACATTGTCGATAGTGTCAGAGGATTCAACCTCGAGCGTGAT 1262218 Query 211079 CGTCTTTCCCGTGAG 211093 ||||| |||||||| Sbjct 1262219 GGTCTTGCCCGTGAG 1262233 >seq11 Length=169478 Score = 143 bits (158), Expect = 6e-29 Identities = 138/177 (78%), Gaps = 0/177 (0%) Strand=Plus/Plus Query 210918 GTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCCAGCTGCTTGCCT 210977 || ||||| ||||||||||| || || || || | |||||||||||||||||| || Sbjct 9394 GTAGACTCCTTTTGGATGTTGTAGTCACTGAGCGTGCGTCCATCTTCCAGCTGCTTTCCA 9453 Query 210978 GCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTTTGTTTC 211037 |||||||| | || || ||||| || || | |||||||||||||||||||| ||| Sbjct 9454 GCGAAGATCAACCGCTGCTGGTCGGGTGGGATGCCTTCCTTGTCCTGGATCTTAGATTTG 9513 Query 211038 ACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGTGAGA 211094 || || ||||| || || ||| ||| || ||||| ||||||||||| || |||||| Sbjct 9514 ACATTGTCGATAGTATCTGAGGATTCGACTTCGAGGGTGATCGTCTTACCAGTGAGA 9570 Score = 140 bits (154), Expect = 8e-28 Identities = 149/197 (76%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 210918 GTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCCAGCTGCTTGCCT 210977 || ||||| || |||||||| || || | || || | |||||| || || || || || Sbjct 9988 GTAGACTCCTTCTGGATGTTGTAGTCGGAGAGTGTACGTCCATCCTCGAGTTGTTTACCG 10047 Query 210978 GCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTTTGTTTC 211037 ||||| || || || ||||| |||||||||| || ||||||||||| ||||| |||| Sbjct 10048 GCGAAAATGAGTCGCTGTTGATCAGGAGGAATACCCTCCTTGTCCTGAATCTTGCTTTTC 10107 Query 211038 ACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGTGAGAGTC 211097 || || ||||||||||| || ||||| || | |||||| ||||| || || | ||| Sbjct 10108 ACATTGTCGATGGTGTCGGATGACTCAACTTCCAAAGTGATGGTCTTGCCAGTCAAGGTC 10167 Query 211098 TTTACAAACACCTGCAT 211114 || ||||| | |||||| Sbjct 10168 TTCACAAAGATCTGCAT 10184 Score = 134 bits (148), Expect = 3e-26 Identities = 157/212 (74%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 || || || ||||| || || || || |||||||| || || | ||||| | ||| ||| Sbjct 10201 AGAACGAGATGAAGGGTTGATTCCTTCTGGATGTTGTAGTCGGAGAGGGTTCGTCCGTCT 10260 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 || || || || || ||||| || || || ||||| |||||||||| || ||||||||| Sbjct 10261 TCGAGTTGTTTACCAGCGAAAATGAGTCGCTGTTGATCAGGAGGAATACCCTCCTTGTCC 10320 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 || ||||| |||||||| || ||||| || ||| || || ||||| ||||| || Sbjct 10321 TGAATCTTGCTCTTCACGTTGTCAATGGTATCGGAGGACTCGACTTCGAGGGTGATGGTT 10380 Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 || || || | |||||| || || | ||||| Sbjct 10381 TTGCCGGTCAAAGTCTTGACGAAGATTTGCAT 10412 Score = 118 bits (130), Expect = 2e-21 Identities = 119/155 (77%), Gaps = 0/155 (0%) Strand=Plus/Plus Query 210939 TAATCCGCAAGGGTCCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGG 210998 ||||| | || || | ||||| || |||||||| || ||||| || | ||||||||| Sbjct 10514 TAATCGGACAGAGTTCGACCATCCTCAAGCTGCTTTCCCGCGAAAATCAAACGTTGTTGG 10573 Query 210999 TCAGGAGGAACTCCTTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAG 211058 ||||| |||| ||| ||||||||||||||||| || ||||| || || || ||||| Sbjct 10574 TCAGGGGGAATTCCCTCCTTGTCCTGGATCTTCGACTTGACGTTGTCAATCGTATCAGAT 10633 Query 211059 CTTTCAACCTCGAGAGTGATCGTCTTTCCCGTGAG 211093 ||| ||||| ||||| || ||||| || ||||| Sbjct 10634 GATTCGACCTCAAGAGTAATAGTCTTCCCGGTGAG 10668 Score = 95.1 bits (104), Expect = 3e-14 Identities = 82/102 (80%), Gaps = 0/102 (0%) Strand=Plus/Plus Query 210905 GACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTC 210964 |||||| || | ||||||||||||||||| || || || | || || | ||||||||| Sbjct 9654 GACAAGATGCAAGGTGGACTCTTTTTGGATATTGTAGTCTGAGAGAGTTCGTCCATCTTC 9713 Query 210965 CAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGG 211006 ||||||||| || ||||| || | |||||||| |||||||| Sbjct 9714 CAGCTGCTTTCCGGCGAAAATCAATCGTTGTTGATCAGGAGG 9755 >seq36 Length=922397 Score = 118 bits (130), Expect = 2e-21 Identities = 119/155 (77%), Gaps = 0/155 (0%) Strand=Plus/Plus Query 210939 TAATCCGCAAGGGTCCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGG 210998 || || | ||| || | ||| ||||||| |||||| || ||||| || | || |||||| Sbjct 24907 TAGTCGGAAAGAGTTCGTCCGTCTTCCAACTGCTTTCCAGCGAAAATCAATCGCTGTTGG 24966 Query 210999 TCAGGAGGAACTCCTTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAG 211058 || ||||||| ||||||||||||||||||||| || || || ||||| ||||| || Sbjct 24967 TCGGGAGGAATTCCTTCCTTGTCCTGGATCTTGGACTTGACATTGTCGATAGTGTCGGAA 25026 Query 211059 CTTTCAACCTCGAGAGTGATCGTCTTTCCCGTGAG 211093 || || || || ||||| ||||| |||||||| Sbjct 25027 GACTCGACTTCAAGGGTGATGGTCTTACCCGTGAG 25061 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1159151435637870