Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Kockovaella_20imperatae_20[genbank_20GCA_5F002102565.1_202017-04-20] 38 sequences; 17,465,713 total letters Query= NC_029997.1 Length=105667 Score E Sequences producing significant alignments: (Bits) Value seq11 125 5e-24 seq12 107 1e-18 >seq11 Length=169478 Score = 125 bits (138), Expect = 5e-24 Identities = 166/228 (73%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| || || || ||| | || || || || |||||| | |||||||| || | Sbjct 10184 ATGCAGATCTTTGTGAAGACCTTGACTGGCAAGACCATCACTTTGGAAGTTGAGTCATCC 10125 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 ||||| | || ||| | |||| || | || ||||| || ||| | || || ||||| Sbjct 10124 GACACCATCGACAATGTGAAAAGCAAGA-TTCAGGACAAGGAGGGTATTCCTCCTGATCA 10066 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 |||||| | || || ||||| |||||||| || || | ||| || | ||| ||||| Sbjct 10065 ACAGCGACTCATTTTCGCCGGTAAACAACTCGAGGATGGACGTACACTCTCCGACTACAA 10006 Query 23790 CATACAAAAAGAGTCCACATTACATTTAGTTTTAAGGTTGCGAGGAGG 23837 ||| || || ||||| || || ||||| || | |||||||||||||| Sbjct 10005 CATCCAGAAGGAGTCTACGTTGCATTTGGTGCTCAGGTTGCGAGGAGG 9958 Score = 95.1 bits (104), Expect = 8e-15 Identities = 147/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 ||||| || ||||| || || | || || ||||| ||||| |||||||| || ||| | Sbjct 10412 ATGCAAATCTTCGTCAAGACTTTGACCGGCAAAACCATCACCCTCGAAGTCGAGTCCTCC 10353 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 || || |||| | | || || ||| ||||| || ||| | || || |||||| Sbjct 10352 GATACCATTGACAACGTGAAGAGCAAGATTCAGGACAAGGAGGGTATTCCTCCTGATCAA 10293 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 ||||| | || || || || |||||||| ||||||| ||| || | ||| |||||| Sbjct 10292 CAGCGACTCATTTTCGCTGGTAAACAACTCGAAGACGGACGAACCCTCTCCGACTACAAC 10233 Query 23791 ATACAAAAAGAGTCCACATTACATTTAGTT 23820 || || || || || || | ||| | ||| Sbjct 10232 ATCCAGAAGGAATCAACCCTTCATCTCGTT 10203 >seq12 Length=1921170 Score = 107 bits (118), Expect = 1e-18 Identities = 152/211 (72%), Gaps = 2/211 (1%) Strand=Plus/Minus Query 23628 AACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACGGACACTGTTGA-AATAT 23686 || ||||||||| || || ||||| ||||| ||||| ||| | |||||| | || ||| | Sbjct 1262237 AAGCCTCACGGGCAAGACCATCACGCTCGAGGTTGAATCCTCTGACACTATCGACAATGT 1262178 Query 23687 TAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAACAGCGTTTAATATTTG 23746 || | || | | ||||| ||||| | || || |||||||| || || || |||| Sbjct 1262177 CAAGTCTAAGA-TCCAGGACAAGGAAGGAATTCCCCCTGATCAACAACGATTGATCTTTG 1262119 Query 23747 CCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAACATACAAAAAGAGTCCA 23806 | || || || ||||||| | ||| ||| | ||| |||||||| || || ||||| | Sbjct 1262118 CTGGAAAGCAGTTGGAAGATGGACGAACTCTCTCCGACTACAACATCCAGAAGGAGTCTA 1262059 Query 23807 CATTACATTTAGTTTTAAGGTTGCGAGGAGG 23837 | | || | || || || ||||||||||| Sbjct 1262058 CTCTTCACCTCGTCTTGAGATTGCGAGGAGG 1262028 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 338009443459304