Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Kockovaella_20imperatae_20[genbank_20GCA_5F002102565.1_202017-04-20] 38 sequences; 17,465,713 total letters Query= NC_030230.1 Length=372707 Score E Sequences producing significant alignments: (Bits) Value seq12 161 2e-34 seq36 116 9e-21 seq11 114 3e-20 >seq12 Length=1921170 Score = 161 bits (178), Expect = 2e-34 Identities = 151/192 (79%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 225498 TCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCC 225557 ||||| ||| ||||| ||||| || || || |||| ||||| |||| | ||||| || Sbjct 1262039 TCTCAAGACGAGGTGAAGAGTAGACTCCTTCTGGATGTTGTAGTCGGAGAGAGTTCGTCC 1262098 Query 225558 ATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTT 225617 |||||| | |||||| ||||| ||||| | ||||||||| || || ||||| |||||||| Sbjct 1262099 ATCTTCCAACTGCTTTCCAGCAAAGATCAATCGTTGTTGATCAGGGGGAATTCCTTCCTT 1262158 Query 225618 GTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGAT 225677 ||| |||||||| ||| ||| ||||| ||||| |||| ||| || || | |||||| Sbjct 1262159 GTCCTGGATCTTAGACTTGACATTGTCGATAGTGTCAGAGGATTCAACCTCGAGCGTGAT 1262218 Query 225678 CGTCTTGCCCGT 225689 ||||||||||| Sbjct 1262219 GGTCTTGCCCGT 1262230 >seq36 Length=922397 Score = 116 bits (128), Expect = 9e-21 Identities = 120/157 (76%), Gaps = 0/157 (0%) Strand=Plus/Plus Query 225533 CATTGTAATCGGCCAAAGTTCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTT 225592 || |||| |||| | ||||| || ||||| | |||||| |||||||| || | ||| | Sbjct 24902 CACTGTAGTCGGAAAGAGTTCGTCCGTCTTCCAACTGCTTTCCAGCGAAAATCAATCGCT 24961 Query 225593 GTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGT 225652 |||||||||| ||||| ||||||||||| |||||||| ||| ||| ||||| |||| Sbjct 24962 GTTGGTCGGGAGGAATTCCTTCCTTGTCCTGGATCTTGGACTTGACATTGTCGATAGTGT 25021 Query 225653 CTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGT 225689 | || | || || || | ||||| ||||| ||||| Sbjct 25022 CGGAAGACTCGACTTCAAGGGTGATGGTCTTACCCGT 25058 >seq11 Length=169478 Score = 114 bits (126), Expect = 3e-20 Identities = 129/173 (75%), Gaps = 0/173 (0%) Strand=Plus/Plus Query 225517 GTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCTTCTAGCTGCTTCCCA 225576 || || || ||||||| ||||| || | || | |||||||| |||||||| ||| Sbjct 9394 GTAGACTCCTTTTGGATGTTGTAGTCACTGAGCGTGCGTCCATCTTCCAGCTGCTTTCCA 9453 Query 225577 GCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTTTTGCTTC 225636 |||||||| | || || |||||||| || || ||||||||||| |||||||| || Sbjct 9454 GCGAAGATCAACCGCTGCTGGTCGGGTGGGATGCCTTCCTTGTCCTGGATCTTAGATTTG 9513 Query 225637 ACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGT 225689 ||| ||||| || ||||||| ||| || || | ||||||||||| || || Sbjct 9514 ACATTGTCGATAGTATCTGAGGATTCGACTTCGAGGGTGATCGTCTTACCAGT 9566 Score = 113 bits (124), Expect = 1e-19 Identities = 134/182 (74%), Gaps = 0/182 (0%) Strand=Plus/Plus Query 225517 GTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCTTCTAGCTGCTTCCCA 225576 || || || || |||| ||||| |||| | || | ||||| || || || || || Sbjct 9988 GTAGACTCCTTCTGGATGTTGTAGTCGGAGAGTGTACGTCCATCCTCGAGTTGTTTACCG 10047 Query 225577 GCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTTTTGCTTC 225636 ||||| || ||||| ||||| || || |||||||| |||||||| || ||||| ||| Sbjct 10048 GCGAAAATGAGTCGCTGTTGATCAGGAGGAATACCCTCCTTGTCCTGAATCTTGCTTTTC 10107 Query 225637 ACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGTCAAAGTT 225696 ||| ||||||||||| || | || || || || ||||| |||||||| ||||| || Sbjct 10108 ACATTGTCGATGGTGTCGGATGACTCAACTTCCAAAGTGATGGTCTTGCCAGTCAAGGTC 10167 Query 225697 TT 225698 || Sbjct 10168 TT 10169 Score = 98.7 bits (108), Expect = 2e-15 Identities = 116/157 (74%), Gaps = 0/157 (0%) Strand=Plus/Plus Query 225533 CATTGTAATCGGCCAAAGTTCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTT 225592 || ||||||||| || ||||| ||||| || |||||||| || ||||| || | |||| Sbjct 10509 CACTGTAATCGGACAGAGTTCGACCATCCTCAAGCTGCTTTCCCGCGAAAATCAAACGTT 10568 Query 225593 GTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGT 225652 ||||||| || ||||| || |||||||| |||||||| ||| || || || || | Sbjct 10569 GTTGGTCAGGGGGAATTCCCTCCTTGTCCTGGATCTTCGACTTGACGTTGTCAATCGTAT 10628 Query 225653 CTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGT 225689 | || | ||| || || | || || ||||| || || Sbjct 10629 CAGATGATTCGACCTCAAGAGTAATAGTCTTCCCGGT 10665 Score = 95.1 bits (104), Expect = 3e-14 Identities = 115/157 (73%), Gaps = 0/157 (0%) Strand=Plus/Plus Query 225533 CATTGTAATCGGCCAAAGTTCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTT 225592 || |||| |||| || ||||| || || || |||||||| ||||| ||||| | || || Sbjct 10823 CACTGTAGTCGGACAGAGTTCGACCGTCCTCAAGCTGCTTTCCAGCAAAGATCAATCTTT 10882 Query 225593 GTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGT 225652 | || || || ||||| ||||| |||||||||||||| || || || ||||| | Sbjct 10883 GCTGATCAGGGGGAATGCCTTCTTTGTCTTGGATCTTGGATTTGACGTTGTCAATGGTAT 10942 Query 225653 CTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGT 225689 | |||| || || || | ||||| ||||| || || Sbjct 10943 CCGAGGACTCGACCTCGAGGGTGATAGTCTTTCCGGT 10979 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1192530619386372