Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Kockovaella_20imperatae_20[genbank_20GCA_5F002102565.1_202017-04-20] 38 sequences; 17,465,713 total letters Query= NC_031033.1 Length=217124 Score E Sequences producing significant alignments: (Bits) Value seq33 129 8e-25 seq11 95.1 2e-14 >seq33 Length=1453386 Score = 129 bits (142), Expect = 8e-25 Identities = 322/489 (66%), Gaps = 0/489 (0%) Strand=Plus/Minus Query 77924 TTCAAATTCATCTCCCCAAACATCATCCAATCCAGGGCATTCATTTGGGCACATCAATGA 77983 ||||||||| |||| ||||| | | ||||||||||| || ||||| | | Sbjct 850553 TTCAAATTCGGCTCCATGGACATCGGCGAGACCAGGGCATTCGGCAGGACACATGAGGGT 850494 Query 77984 CCAGTCACCATCTTCCTTAACTCGTTTCATAAAGAGATCAGGTATCCATAGAGCAATAAA 78043 ||||||||| || | | ||||| ||||| || || || |||||||| || || || Sbjct 850493 CCAGTCACCGTCGGCTTCGACTCGCTTCATGAACAGGTCGGGTATCCAGAGGGCGTAGAA 850434 Query 78044 TAGATCTCGGGTTCTATGTTCTTCATTTCCTGTATTCTTTTTAAGATCGAGAAACTCCAT 78103 ||||| |||| || ||||| || || ||||||| | ||||| || || | Sbjct 850433 AAGATCACGGGCTCGGACCTCTTCCTTACCGTGATTCTTTCGCAAGTCGAGGAAGTCAAA 850374 Query 78104 AATATCAGAATGCCATGGTTCTAGATATATTGCCATAACTCCAGGTCGTTTATTACCTCC 78163 | ||| | ||||| || |||||||| || || | | ||||| || || || || || Sbjct 850373 GACATCGGCGTGCCAGGGCTCTAGATAGATGGCAAAGGCACCAGGACGCTTGTTTCCACC 850314 Query 78164 CTGATCTATATATCTGGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCGTTAGA 78223 ||| || | || | |||||| | | | ||| | ||| || | |||||||| || Sbjct 850313 CTGGTCGACGTAACGAGCGGTGGCGTCAAAGGCTCGGAGCATAGGTACGATACCGTTCGA 850254 Query 78224 TGTTCCATTTGTTCCAGAAATATAACTTCCACTTGCGCGAATATTACTAATGGATATCCC 78283 ||| || || || | ||| || || | || ||||| || |||| | || Sbjct 850253 GTATCCGTTGGTACCGGCAATGTAGGAGCCCTTGGCTCGAATGTTGTGAATGTGAAGTCC 850194 Query 78284 TATTCCTCCTGCCATCTTAGATATTAGAGCGCAACGTTTCAATGTATCGTAGATACCCTC 78343 || ||||| || |||| || || ||||||| ||||| || |||||||| || || Sbjct 850193 GATACCTCCGGCAGTCTTGGAGATCTGAGCGCAGGTCTTCAAAGTCTCGTAGATGCCGTC 850134 Query 78344 TATACTGTCATCCATCATGTTAAGAAGAAAACAGCTAGACATTTGATGATGAACAGTTCC 78403 || ||| || |||| | ||| || ||| ||||||||| | ||| |||||| Sbjct 850133 AATGGAGTCGTCTCGCATGGCGACAAGGAAGCAGGAGGACATTTGAGGGTGAGGAGTTCC 850074 Query 78404 TGCATTAAA 78412 || || || Sbjct 850073 GGCGTTGAA 850065 Score = 87.8 bits (96), Expect = 2e-12 Identities = 153/220 (70%), Gaps = 2/220 (1%) Strand=Plus/Minus Query 78413 TAATGTCGGAGATGCATGCGTAAACCATTTTTCAGAAAGTAGATTGTATGTTTCAATAGC 78472 || ||| || || || || ||||| || || || | || |||||||||||||| || Sbjct 850015 TACTGTGGGCGAGGCGTGGGTAAAATATCGCTCCGACATGAGGTTGTATGTTTCAATGGC 849956 Query 78473 TGATTCTATGTC-CCATTGATGAATTCCTACCGCTACACGCATCAACATATGCTGAGGTC 78531 || | || || | |||||||| || || |||||||| | ||| || ||||||| Sbjct 849955 ACGATCGACATCGGCACCG-TGAATTCCGACGGCCACACGCATGATCATGTGTTGAGGTC 849897 Query 78532 TTTCAACCGTCTTATTATTTATTTTCAACAAGTATGATTTTTCCAAAGTTTTAAAACCAA 78591 |||||| |||| ||| ||| | |||||| ||| ||| | ||| || || |||| Sbjct 849896 GTTCAACAATCTTTCCATTGATTCGGAGCAAGTAGGATCGTTCAAGAGTCTTGAACCCAA 849837 Query 78592 AATAGTTGTATGAAAAGTCTCTCTCGTAAATAATAACAGA 78631 | || ||||| | || || | ||||| ||||| || || Sbjct 849836 AGTAATTGTAGGCGAAATCACGGTCGTAGATAATGACCGA 849797 >seq11 Length=169478 Score = 95.1 bits (104), Expect = 2e-14 Identities = 162/233 (70%), Gaps = 3/233 (1%) Strand=Plus/Minus Query 48156 TGAAGACCTTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGACCGGGCATTAGTCCA 48215 || || || ||||| ||| || | |||||| || ||||||||||| ||||| || || Sbjct 25101 TGGAGTCCCTCATCCCTAGAGATGAGTTCGTTGGAGAATGTGAGACCAGGCATGAGACCC 25042 Query 48216 CGTTTTTTGAGCCAAAATATTGCCGCGAAAGATCCAGAAAAGAATATGCCTTCTACGGCC 48275 | || || ||||| || || | || || || ||||| ||||| || ||||| ||||| Sbjct 25041 CTCTTCTTAAGCCAGAAGATGGAGGCAAACGAACCAGAGAAGAAAATACCTTCAACGGCG 24982 Query 48276 GCAAATGCGGTAAGTCTCTCTCCGTAACTGGCTTCGTTGT--GT-ATCCACCGTTGTGCC 48332 || || ||| | | || ||| || | | | | |||| || ||||| ||||| Sbjct 24981 GCGAAGGCGATCAATCGCTCGGCGAAGGTCGATCGTTTGTCAGTGATCCATTTGAGTGCC 24922 Query 48333 CAATCAGCCTTCTTCTTTACACAAGGCATTGTTTCTATAGCATTAAAGAGAAA 48385 || | ||||||||| | | |||||| || || || || || | ||||| || Sbjct 24921 CATTGAGCCTTCTTTTGGATACAAGGGATGGTGTCAATGGCTTCGAAGAGGAA 24869 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 694668470032320