Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Kockovaella_20imperatae_20[genbank_20GCA_5F002102565.1_202017-04-20] 38 sequences; 17,465,713 total letters Query= NC_031038.1 Length=222832 Score E Sequences producing significant alignments: (Bits) Value seq33 105 1e-17 seq37 86.0 9e-12 >seq33 Length=1453386 Score = 105 bits (116), Expect = 1e-17 Identities = 473/759 (62%), Gaps = 53/759 (7%) Strand=Plus/Minus Query 76519 TTCAAATTCATCTCCCCAAACATCATCCAAACCAGGACATTCATTCGGACACATCAATGA 76578 ||||||||| |||| ||||| | | |||||| ||||| |||||||| | | Sbjct 850553 TTCAAATTCGGCTCCATGGACATCGGCGAGACCAGGGCATTCGGCAGGACACATGAGGGT 850494 Query 76579 CCACTCACCATCTTCCTTAACCCGTTTCATAAAGAGATCAGGTATCCATAGAGCAATAAA 76638 ||| ||||| || | | || || ||||| || || || |||||||| || || || Sbjct 850493 CCAGTCACCGTCGGCTTCGACTCGCTTCATGAACAGGTCGGGTATCCAGAGGGCGTAGAA 850434 Query 76639 TAGATCTCGGGTTCTACGTTCTTCATTTCCTGTATTCTTTTTAAGATCTAGGAACTCCAT 76698 ||||| |||| || ||||| || || ||||||| | || ||||| || | Sbjct 850433 AAGATCACGGGCTCGGACCTCTTCCTTACCGTGATTCTTTCGCAAGTCGAGGAAGTCAAA 850374 Query 76699 AATATCAGAATGCCATGGTTCTAGATATATCGCCATAACACCCGGTCGTTTATTACCTCC 76758 | ||| | ||||| || |||||||| || || | |||| || || || || || || Sbjct 850373 GACATCGGCGTGCCAGGGCTCTAGATAGATGGCAAAGGCACCAGGACGCTTGTTTCCACC 850314 Query 76759 CTGATCTATATATCTGGCAGTGTTATTATAAACTCTCAACATTGGAATAATGCCGTTAGA 76818 ||| || | || | || ||| | | | ||| | ||| || | || ||||| || Sbjct 850313 CTGGTCGACGTAACGAGCGGTGGCGTCAAAGGCTCGGAGCATAGGTACGATACCGTTCGA 850254 Query 76819 TGTA-CCATTTGTTCCAGAAATATAACTTCCACATGCACGAATATTACTAATAGATAGGC 76877 ||| || || || || | ||| || || || ||||| || ||| || | Sbjct 850253 -GTATCCGTTGGTACCGGCAATGTAGGAGCCCTTGGCTCGAATGTTGTGAATGTGAAGTC 850195 Query 76878 CTATTCCTCCTGCCATTTTAGAGATTAGAGCACAGCGTTTCAATGTGTCATAGATGCCCT 76937 | || ||||| || | || ||||| |||| ||| ||||| || || |||||||| | Sbjct 850194 CGATACCTCCGGCAGTCTTGGAGATCTGAGCGCAGGTCTTCAAAGTCTCGTAGATGCCGT 850135 Query 76938 CTATACTATCATCCATCATGTTAAGAAGAAAACAGCTAGACATTTGATGATGAACAGTTC 76997 | || || || |||| | ||| || ||| ||||||||| | ||| ||||| Sbjct 850134 CAATGGAGTCGTCTCGCATGGCGACAAGGAAGCAGGAGGACATTTGAGGGTGAGGAGTTC 850075 Query 76998 CTGCATTAAACAA----------------------------------------------- 77010 | || || |||| Sbjct 850074 CGGCGTTGAACAGCTGACAATTGGGTTAGACTAGGGACTTGACTCGGCCTGACAACACTT 850015 Query 77011 --TGTAGGAGATGCATGAGTGAACCATTTTTCAGAAAGTAGATTGTATGTTTCAATAACT 77068 ||| || || || || || || || || || | || |||||||||||||| | Sbjct 850014 ACTGTGGGCGAGGCGTGGGTAAAATATCGCTCCGACATGAGGTTGTATGTTTCAATGGCA 849955 Query 77069 GCTTCTATATCC-CATTGATGAATTCCTACAGCGACACGCATCAACATATGCTGAGGTCG 77127 || | ||| || | |||||||| || || |||||||| | ||| || |||||||| Sbjct 849954 CGATCGACATCGGCACCG-TGAATTCCGACGGCCACACGCATGATCATGTGTTGAGGTCG 849896 Query 77128 TTCTACAGTCTTATTATTTATTTTCAACAAGTATGATTTTTCCAAAGTTTTAAAACCAAA 77187 ||| ||| |||| ||| ||| | |||||| ||| ||| | ||| || || ||||| Sbjct 849895 TTCAACAATCTTTCCATTGATTCGGAGCAAGTAGGATCGTTCAAGAGTCTTGAACCCAAA 849836 Query 77188 ATAGTTGTATGAAAAGTCTCTTTCGTAAATAATAACCGA 77226 || ||||| | || || | ||||| ||||| ||||| Sbjct 849835 GTAATTGTAGGCGAAATCACGGTCGTAGATAATGACCGA 849797 >seq37 Length=816703 Score = 86.0 bits (94), Expect = 9e-12 Identities = 99/131 (76%), Gaps = 2/131 (2%) Strand=Plus/Minus Query 46651 CCTTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGCCCAGGCATTAGTCCACGCTTT 46710 |||||||| | || || | ||||| || || || | |||||||| || || | ||| Sbjct 353583 CCTTCATCCCGGCTGATGAGCTCGTTGGAGAAAGTCAAGCCAGGCATGAGACCCCTCTTC 353524 Query 46711 TTGAGCCAAAATATAGCCGCGAAAGAT-CCAGAAAAGAATATGCCTTCTACAGCCGCGAA 46769 || ||||| || |||||||| |||| | ||||| |||||||||||||| ||| || || Sbjct 353523 TTCAGCCAGAAAATAGCCGC-AAAGCTGCCAGAGAAGAATATGCCTTCCACACAAGCAAA 353465 Query 46770 TGCGACAAGTC 46780 ||||| |||| Sbjct 353464 AGCGACCAGTC 353454 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 712934061356160