Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Kockovaella_20imperatae_20[genbank_20GCA_5F002102565.1_202017-04-20] 38 sequences; 17,465,713 total letters Query= NC_031465.1 Length=360610 Score E Sequences producing significant alignments: (Bits) Value seq11 104 5e-17 seq12 89.7 1e-12 >seq11 Length=169478 Score = 104 bits (114), Expect = 5e-17 Identities = 152/215 (71%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 151890 CTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCA 151949 ||||| || | ||| | |||||||| || ||||||||||| |||| | || | ||| Sbjct 9970 CTGAGCACCAAATGCAACGTAGACTCCTTCTGGATGTTGTAGTCGGAGAGTGTACGTCCA 10029 Query 151950 TCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTT 152009 || || || ||| |||||||| || || | ||| || || | | || || ||||| Sbjct 10030 TCCTCGAGTTGTTTACCGGCGAAAATGAGTCGCTGTTGATCAGGAGGAATACCCTCCTTG 10089 Query 152010 TCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATA 152069 || ||||| || ||| ||| | || | | |||| || ||| ||||| | ||| || Sbjct 10090 TCCTGAATCTTGCTTTTCACATTGTCGATGGTGTCGGATGACTCAACTTCCAAAGTGATG 10149 Query 152070 GTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 || ||||| || | |||||||| |||| |||||| Sbjct 10150 GTCTTGCCAGTCAAGGTCTTCACAAAGATCTGCAT 10184 Score = 95.1 bits (104), Expect = 3e-14 Identities = 148/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 151893 AGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCT 151952 || || |||||||| || || || || ||||||||||| |||| | |||| || ||| Sbjct 10201 AGAACGAGATGAAGGGTTGATTCCTTCTGGATGTTGTAGTCGGAGAGGGTTCGTCCGTCT 10260 Query 151953 TCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCT 152012 || || ||| || ||||| || || | ||| || || | | || || ||||| || Sbjct 10261 TCGAGTTGTTTACCAGCGAAAATGAGTCGCTGTTGATCAGGAGGAATACCCTCCTTGTCC 10320 Query 152013 TGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTT 152072 ||||| || || || | || | | | || || ||| ||||| || || || ||| Sbjct 10321 TGAATCTTGCTCTTCACGTTGTCAATGGTATCGGAGGACTCGACTTCGAGGGTGATGGTT 10380 Query 152073 TTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 ||||| || | |||||| ||||||| ||||| Sbjct 10381 TTGCCGGTCAAAGTCTTGACGAAGATTTGCAT 10412 Score = 87.8 bits (96), Expect = 4e-12 Identities = 128/179 (72%), Gaps = 4/179 (2%) Strand=Plus/Plus Query 151908 GTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTAG--GCTTTTCC 151965 |||||||| |||||||||||||| || | || | |||||||| || ||||| | Sbjct 9394 GTAGACTCCTTTTGGATGTTGTAGTCACTGAGCGTGCGTCCATCTTCCAGCTGCTTT--C 9451 Query 151966 CGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAATTTTTTGTT 152025 | |||||||| | || ||||||||| | | ||| |||||||| || || || || || Sbjct 9452 CAGCGAAGATCAACCGCTGCTGGTCGGGTGGGATGCCTTCCTTGTCCTGGATCTTAGATT 9511 Query 152026 TGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGCCCGTGAGA 152084 ||||| | || | | ||||| || ||||| || || || || || || |||||| Sbjct 9512 TGACATTGTCGATAGTATCTGAGGATTCGACTTCGAGGGTGATCGTCTTACCAGTGAGA 9570 >seq12 Length=1921170 Score = 89.7 bits (98), Expect = 1e-12 Identities = 139/197 (71%), Gaps = 4/197 (2%) Strand=Plus/Plus Query 151889 TCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCC 151948 ||| | ||| || |||||||||||||| || ||||||||||| |||| | ||||| || Sbjct 1262039 TCTCAAGACGAGGTGAAGAGTAGACTCCTTCTGGATGTTGTAGTCGGAGAGAGTTCGTCC 1262098 Query 151949 ATCTTCTA--GGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCC 152006 |||||| | ||||| || || ||||| | | || || || | | ||||||||| Sbjct 1262099 ATCTTCCAACTGCTTT--CCAGCAAAGATCAATCGTTGTTGATCAGGGGGAATTCCTTCC 1262156 Query 152007 TTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTA 152066 || || || || || |||||| | || | |||| || || || || || || Sbjct 1262157 TTGTCCTGGATCTTAGACTTGACATTGTCGATAGTGTCAGAGGATTCAACCTCGAGCGTG 1262216 Query 152067 ATAGTTTTGCCCGTGAG 152083 || || ||||||||||| Sbjct 1262217 ATGGTCTTGCCCGTGAG 1262233 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1153820238233498