Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Kockovaella_20imperatae_20[genbank_20GCA_5F002102565.1_202017-04-20] 38 sequences; 17,465,713 total letters Query= NC_032001.1 Length=327147 Score E Sequences producing significant alignments: (Bits) Value seq11 161 2e-34 seq12 131 4e-25 seq36 111 3e-19 >seq11 Length=169478 Score = 161 bits (178), Expect = 2e-34 Identities = 158/204 (77%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931 ||||||||| || ||||| |||| || || || || |||||||||||||||||| Sbjct 9363 ACCACCACGGAGCCGAAGCACCAAGTGCAAGGTAGACTCCTTTTGGATGTTGTAGTCACT 9422 Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991 |||||||| ||||| || || || || || || |||||||| || || ||||| || Sbjct 9423 GAGCGTGCGTCCATCTTCCAGCTGCTTTCCAGCGAAGATCAACCGCTGCTGGTCGGGTGG 9482 Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051 || || |||||||| |||||||| | ||| || | |||||||| || || | |||||| Sbjct 9483 GATGCCTTCCTTGTCCTGGATCTTAGATTTGACATTGTCGATAGTATCTGAGGATTCGAC 9542 Query 283052 TTCGAGAGTGATCGTCTTACCCGT 283075 |||||| |||||||||||||| || Sbjct 9543 TTCGAGGGTGATCGTCTTACCAGT 9566 Score = 158 bits (174), Expect = 3e-33 Identities = 174/229 (76%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931 ||| || |||| | || |||| ||| ||||| || || |||||||||||||| | Sbjct 9957 ACCTCCTCGCAACCTGAGCACCAAATGCAACGTAGACTCCTTCTGGATGTTGTAGTCGGA 10016 Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991 || || || |||||||| |||||||| ||||| || || | || ||||| ||| || Sbjct 10017 GAGTGTACGTCCATCCTCGAGTTGTTTACCGGCGAAAATGAGTCGCTGTTGATCAGGAGG 10076 Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCTTTT-ACGGTATCGATAGTGTCCGAAGCTTCGA 283050 ||||||||||||||| || ||| |||||||| || | ||||| ||||| || | || | Sbjct 10077 AATACCCTCCTTGTCCTGAATC-TTGCTTTTCACATTGTCGATGGTGTCGGATGACTCAA 10135 Query 283051 CTTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 |||| | |||||| ||||| || ||||| ||||| || || |||||||| Sbjct 10136 CTTCCAAAGTGATGGTCTTGCCAGTCAAGGTCTTCACAAAGATCTGCAT 10184 Score = 158 bits (174), Expect = 3e-33 Identities = 174/229 (76%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931 ||||||||| || ||||| || ||||| | || ||| || |||||||||||||| | Sbjct 10185 ACCACCACGGAGACGAAGAACGAGATGAAGGGTTGATTCCTTCTGGATGTTGTAGTCGGA 10244 Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991 || || || || || || |||||||| || || || || | || ||||| ||| || Sbjct 10245 GAGGGTTCGTCCGTCTTCGAGTTGTTTACCAGCGAAAATGAGTCGCTGTTGATCAGGAGG 10304 Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCT-TTTACGGTATCGATAGTGTCCGAAGCTTCGA 283050 ||||||||||||||| || ||| ||||| || ||| | || || || || || | |||| Sbjct 10305 AATACCCTCCTTGTCCTGAATC-TTGCTCTTCACGTTGTCAATGGTATCGGAGGACTCGA 10363 Query 283051 CTTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 ||||||| ||||| || || || ||||||||||| ||||| || ||||| Sbjct 10364 CTTCGAGGGTGATGGTTTTGCCGGTCAAAGTCTTGACGAAGATTTGCAT 10412 Score = 111 bits (122), Expect = 3e-19 Identities = 117/154 (76%), Gaps = 0/154 (0%) Strand=Plus/Plus Query 282922 TGTAGTCAGCAAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTT 282981 |||| || | || || || |||||||| || || || || || || ||||||||||||| Sbjct 10512 TGTAATCGGACAGAGTTCGACCATCCTCAAGCTGCTTTCCCGCGAAAATCAAACGTTGTT 10571 Query 282982 GGTCACCCGGAATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCG 283041 ||||| ||||| ||||||||||| |||||||| | || ||| | || || || || | Sbjct 10572 GGTCAGGGGGAATTCCCTCCTTGTCCTGGATCTTCGACTTGACGTTGTCAATCGTATCAG 10631 Query 283042 AAGCTTCGACTTCGAGAGTGATCGTCTTACCCGT 283075 | | |||||| || ||||| || ||||| || || Sbjct 10632 ATGATTCGACCTCAAGAGTAATAGTCTTCCCGGT 10665 Score = 107 bits (118), Expect = 4e-18 Identities = 116/154 (75%), Gaps = 0/154 (0%) Strand=Plus/Plus Query 282922 TGTAGTCAGCAAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTT 282981 ||||||| | || || || || ||||| || || || || ||||||||||| | ||| | Sbjct 10826 TGTAGTCGGACAGAGTTCGACCGTCCTCAAGCTGCTTTCCAGCAAAGATCAATCTTTGCT 10885 Query 282982 GGTCACCCGGAATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCG 283041 | ||| ||||| || || |||||||||||||| | ||| ||| | || || || |||| Sbjct 10886 GATCAGGGGGAATGCCTTCTTTGTCTTGGATCTTGGATTTGACGTTGTCAATGGTATCCG 10945 Query 283042 AAGCTTCGACTTCGAGAGTGATCGTCTTACCCGT 283075 | | ||||| ||||| ||||| ||||| || || Sbjct 10946 AGGACTCGACCTCGAGGGTGATAGTCTTTCCGGT 10979 Score = 84.2 bits (92), Expect = 5e-11 Identities = 96/129 (74%), Gaps = 0/129 (0%) Strand=Plus/Plus Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931 ||| || ||||| || | || ||||| || ||| ||||||||||| |||||||| | Sbjct 9636 ACCTCCTCGCAGACGCAAGACAAGATGCAAGGTGGACTCTTTTTGGATATTGTAGTCTGA 9695 Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991 || || || ||||| || || || || ||||| || ||||| |||||||| ||| || Sbjct 9696 GAGAGTTCGTCCATCTTCCAGCTGCTTTCCGGCGAAAATCAATCGTTGTTGATCAGGAGG 9755 Query 282992 AATACCCTC 283000 || ||||| Sbjct 9756 GATGCCCTC 9764 >seq12 Length=1921170 Score = 131 bits (144), Expect = 4e-25 Identities = 129/167 (77%), Gaps = 0/167 (0%) Strand=Plus/Plus Query 282909 TCTTTTTGGATGTTGTAGTCAGCAAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAG 282968 || || |||||||||||||| | || || || ||||| || | || || || |||||| Sbjct 1262064 TCCTTCTGGATGTTGTAGTCGGAGAGAGTTCGTCCATCTTCCAACTGCTTTCCAGCAAAG 1262123 Query 282969 ATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTA 283028 ||||| |||||||| ||| ||||| || |||||||| |||||||| | || || | Sbjct 1262124 ATCAATCGTTGTTGATCAGGGGGAATTCCTTCCTTGTCCTGGATCTTAGACTTGACATTG 1262183 Query 283029 TCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGT 283075 ||||||||||| || | ||| || ||||| ||||| ||||| ||||| Sbjct 1262184 TCGATAGTGTCAGAGGATTCAACCTCGAGCGTGATGGTCTTGCCCGT 1262230 >seq36 Length=922397 Score = 111 bits (122), Expect = 3e-19 Identities = 117/154 (76%), Gaps = 0/154 (0%) Strand=Plus/Plus Query 282922 TGTAGTCAGCAAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTT 282981 ||||||| | ||| || || || || || | || || || || || ||||| || |||| Sbjct 24905 TGTAGTCGGAAAGAGTTCGTCCGTCTTCCAACTGCTTTCCAGCGAAAATCAATCGCTGTT 24964 Query 282982 GGTCACCCGGAATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCG 283041 |||| ||||| || |||||||| |||||||| | || || | ||||||||||| | Sbjct 24965 GGTCGGGAGGAATTCCTTCCTTGTCCTGGATCTTGGACTTGACATTGTCGATAGTGTCGG 25024 Query 283042 AAGCTTCGACTTCGAGAGTGATCGTCTTACCCGT 283075 ||| |||||||| || ||||| ||||||||||| Sbjct 25025 AAGACTCGACTTCAAGGGTGATGGTCTTACCCGT 25058 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1046738690368852