Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Kockovaella_20imperatae_20[genbank_20GCA_5F002102565.1_202017-04-20] 38 sequences; 17,465,713 total letters Query= NC_032255.1 Length=112536 Score E Sequences producing significant alignments: (Bits) Value seq12 132 3e-26 seq11 111 1e-19 >seq12 Length=1921170 Score = 132 bits (146), Expect = 3e-26 Identities = 163/220 (74%), Gaps = 6/220 (3%) Strand=Plus/Plus Query 44107 CATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATC 44166 ||| || |||| || |||||| || |||||||| || |||||| ||||||||||| || Sbjct 1262024 CATACCTCCTCGCAATCTCAAGACGAGGTGAAGAGTAGACTCCTTCTGGATGTTGTAGTC 1262083 Query 44167 GGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGA 44226 || ||| || | || |||| |||||| || ||||||||||| || || ||||| | Sbjct 1262084 GGAGAGAGTTCGTCCATCTTCCAACTGCTTTCCAGCAAAGATCAATCGTTGTTGATCAGG 1262143 Query 44227 AGGCACACCTTCCTTTTCCGTTATCTTCTGCTT--CAATGTTCCTATGGTGTCGGCGGAT 44284 || | |||||||| ||| ||||| ||| || ||| | || ||||| | |||| Sbjct 1262144 GGGAATTCCTTCCTTGTCCTGGATCTTAGACTTGACATTGT--CGATAGTGTCAGAGGAT 1262201 Query 44285 TCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCA 44324 || ||||| | ||| || ||||| ||||||||| ||||| Sbjct 1262202 TCAACCTCGAGCGTGATGGTCTTGCCCGTGAGG--CTTCA 1262239 >seq11 Length=169478 Score = 111 bits (122), Expect = 1e-19 Identities = 167/235 (71%), Gaps = 8/235 (3%) Strand=Plus/Plus Query 44107 CATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATC 44166 ||| || |||| || || | ||||| || | ||| |||||| ||||||||||| || Sbjct 9954 CATACCTCCTCGCAACCTGAGCACCAAATGCAACGTAGACTCCTTCTGGATGTTGTAGTC 10013 Query 44167 GGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGA 44226 || |||| || | || || || || || ||||| || || | ||||| ||||| | Sbjct 10014 GGAGAGTGTACGTCCATCCTCGAGTTGTTTACCGGCGAAAATGAGTCGCTGTTGATCAGG 10073 Query 44227 AGGCACACCTTCCTTTTCCGTTATCTTCTGCTT----CAATGTTCCTATGGTGTCGGCGG 44282 ||| | ||| ||||| ||| |||| ||||| || ||| | |||||||||| | Sbjct 10074 AGGAATACCCTCCTTGTCCTGAATCT--TGCTTTTCACATTGT--CGATGGTGTCGGATG 10129 Query 44283 ATTCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 | || || |||| || || ||||| || || | ||||||||| ||||| ||||| Sbjct 10130 ACTCAACTTCCAAAGTGATGGTCTTGCCAGTCAAGGTCTTCACAAAGATCTGCAT 10184 Score = 93.3 bits (102), Expect = 3e-14 Identities = 146/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 44129 ACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCC 44188 || || ||||| || ||||| ||||||||||| |||| ||| || |||| || Sbjct 10204 ACGAGATGAAGGGTTGATTCCTTCTGGATGTTGTAGTCGGAGAGGGTTCGTCCGTCTTCG 10263 Query 44189 AGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTT 44248 || || || || || || || | ||||| ||||| | ||| | ||| ||||| ||| Sbjct 10264 AGTTGTTTACCAGCGAAAATGAGTCGCTGTTGATCAGGAGGAATACCCTCCTTGTCCTGA 10323 Query 44249 ATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTT 44308 ||||| ||||| | | ||||| |||| ||| || || || | || || || || Sbjct 10324 ATCTTGCTCTTCACGTTGTCAATGGTATCGGAGGACTCGACTTCGAGGGTGATGGTTTTG 10383 Query 44309 CCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 || || | ||||| |||||||||||||| Sbjct 10384 CCGGTCAAAGTCTTGACGAAGATTTGCAT 10412 Score = 91.5 bits (100), Expect = 1e-13 Identities = 136/191 (71%), Gaps = 4/191 (2%) Strand=Plus/Plus Query 44128 CACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTC 44187 ||||| ||| | || |||||||||||||||||| || ||| ||| | || || Sbjct 9381 CACCAAGTGCAAGGTAGACTCCTTTTGGATGTTGTAGTCACTGAGCGTGCGTCCATCTTC 9440 Query 44188 CAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGT 44247 ||||||||| || || |||||||| |||||||| || | || | |||||||| ||| Sbjct 9441 CAGCTGCTTTCCAGCGAAGATCAACCGCTGCTGGTCGGGTGGGATGCCTTCCTTGTCCTG 9500 Query 44248 TATCTTCTGCTT--CAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTC 44305 ||||| || || ||| | || || || | |||||| || || | || |||||| Sbjct 9501 GATCTTAGATTTGACATTGT--CGATAGTATCTGAGGATTCGACTTCGAGGGTGATCGTC 9558 Query 44306 TTTCCCGTGAG 44316 || || ||||| Sbjct 9559 TTACCAGTGAG 9569 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 359990233279446