Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Kockovaella_20imperatae_20[genbank_20GCA_5F002102565.1_202017-04-20] 38 sequences; 17,465,713 total letters Query= NC_033775.1 Length=376207 Score E Sequences producing significant alignments: (Bits) Value seq11 152 1e-31 >seq11 Length=169478 Score = 152 bits (168), Expect = 1e-31 Identities = 158/207 (76%), Gaps = 0/207 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||| ||||| || ||| | || || ||||| ||||||||||| || || ||| || Sbjct 10409 CAAATCTTCGTCAAGACTTTGACCGGCAAAACCATCACCCTCGAAGTCGAGTCCTCCGAT 10350 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 ||||| || ||||| || |||||||||||||| || || || ||||| || || || Sbjct 10349 ACCATTGACAACGTGAAGAGCAAGATTCAGGACAAGGAGGGTATTCCTCCTGATCAACAG 10290 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 ||||| || ||||| || ||||| |||||||| ||| | || || |||| || ||| || Sbjct 10289 CGACTCATTTTCGCTGGTAAACAACTCGAAGACGGACGAACCCTCTCCGACTACAACATC 10230 Query 178104 CAAAAAGAATCAACACTGCATCTTGTT 178130 || || |||||||| || ||||| ||| Sbjct 10229 CAGAAGGAATCAACCCTTCATCTCGTT 10203 Score = 147 bits (162), Expect = 5e-30 Identities = 146/188 (78%), Gaps = 1/188 (1%) Strand=Plus/Minus Query 177941 TCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGACACCATCGAGAACGTCAA 178000 |||||| || || |||||||||||||| || ||| |||||| || ||||| || ||||| Sbjct 9570 TCTCACTGGTAAGACGATCACCCTCGAAGTCGAATCCTCAGATACTATCGACAATGTCAA 9511 Query 178001 ACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGACTTATCTTCGCCGG 178060 | ||||| |||||||| ||||| ||||| || |||||||| || | |||||||| || Sbjct 9510 ATCTAAGATCCAGGACAAGGAAGGCATCCCACCCGACCAGCAGCGGTTGATCTTCGCTGG 9451 Query 178061 AAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTCCAAAAAGAATCAACACT 178120 ||| ||||| ||||||||| | || || || || ||| ||||||| || || || | Sbjct 9450 AAAGCAGCTGGAAGATGGACGCACGCTCAGTGACTACAACATCCAAAAGGAGTCTACCTT 9391 Query 178121 GCATCTTG 178128 ||| |||| Sbjct 9390 GCA-CTTG 9384 Score = 120 bits (132), Expect = 7e-22 Identities = 147/201 (73%), Gaps = 0/201 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || || ||||| || | || || || || ||||| | || || || || ||| Sbjct 10181 CAGATCTTTGTGAAGACCTTGACTGGCAAGACCATCACTTTGGAAGTTGAGTCATCCGAC 10122 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 |||||||| || || ||| |||||||||||||| || || || ||||| || || || Sbjct 10121 ACCATCGACAATGTGAAAAGCAAGATTCAGGACAAGGAGGGTATTCCTCCTGATCAACAG 10062 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 ||||| || |||||||| ||||| ||||| |||||| | || || |||| || ||| || Sbjct 10061 CGACTCATTTTCGCCGGTAAACAACTCGAGGATGGACGTACACTCTCCGACTACAACATC 10002 Query 178104 CAAAAAGAATCAACACTGCAT 178124 || || || || || ||||| Sbjct 10001 CAGAAGGAGTCTACGTTGCAT 9981 Score = 113 bits (124), Expect = 1e-19 Identities = 118/155 (76%), Gaps = 0/155 (0%) Strand=Plus/Minus Query 177942 CTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGACACCATCGAGAACGTCAAA 178001 || || ||||| || |||||||||||||| || ||| || ||||| || ||||||||| Sbjct 10982 CTTACCGGAAAGACTATCACCCTCGAGGTCGAGTCCTCGGATACCATTGACAACGTCAAA 10923 Query 178002 CAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGACTTATCTTCGCCGGA 178061 ||||| || ||||||||||| || || || || |||||| || | ||||| || ||| Sbjct 10922 TCCAAGATCCAAGACAAAGAAGGCATTCCCCCTGATCAGCAAAGATTGATCTTTGCTGGA 10863 Query 178062 AAACAGCTCGAAGATGGAAGGACTCTTGCCGATTA 178096 || ||||| || || || | ||||| |||| || Sbjct 10862 AAGCAGCTTGAGGACGGTCGAACTCTGTCCGACTA 10828 Score = 100 bits (110), Expect = 7e-16 Identities = 91/115 (79%), Gaps = 0/115 (0%) Strand=Plus/Minus Query 178019 AGAAGGAATCCCTCCGGACCAGCAACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGG 178078 ||| || |||||||| || || |||||| | || ||||||||||| ||||| |||||||| Sbjct 9765 AGAGGGCATCCCTCCTGATCAACAACGATTGATTTTCGCCGGAAAGCAGCTGGAAGATGG 9706 Query 178079 AAGGACTCTTGCCGATTATAACGTCCAAAAAGAATCAACACTGCATCTTGTTTTG 178133 | | ||||| | || || || |||||||||| || || |||||||||| ||| Sbjct 9705 ACGAACTCTCTCAGACTACAATATCCAAAAAGAGTCCACCTTGCATCTTGTCTTG 9651 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1203730613933372