Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Kockovaella_20imperatae_20[genbank_20GCA_5F002102565.1_202017-04-20] 38 sequences; 17,465,713 total letters Query= NC_033780.1 Length=144510 Score E Sequences producing significant alignments: (Bits) Value seq11 114 1e-20 >seq11 Length=169478 Score = 114 bits (126), Expect = 1e-20 Identities = 156/214 (73%), Gaps = 8/214 (4%) Strand=Plus/Plus Query 41653 CACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTC 41712 ||||| ||||| ||| ||||||||| ||||| ||||||||||| || || | || || Sbjct 9975 CACCAAATGCAACGTAGACTCCTTCTGGATGTTGTAGTCGGAGAGTGTACGTCCATCCTC 10034 Query 41713 GAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTCCAT 41772 ||| || || |||||||| || || |||||||| || | |||| | |||||||||| | Sbjct 10035 GAGTTGTTTACCGGCGAAAATGAGTCGCTGTTGATCAGGAGGAATACCCTCCTTGTCC-T 10093 Query 41773 GATTTTTTGCTT----CAACGACGACACAGTGTCGCTCGACTCCACCTCCACCGTTATCG 41828 || | |||||| || | || | |||||| ||||| || |||| || || | Sbjct 10094 GA-ATCTTGCTTTTCACATTGTCG--ATGGTGTCGGATGACTCAACTTCCAAAGTGATGG 10150 Query 41829 TTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 | || || |||| ||||| || || |||||||| Sbjct 10151 TCTTGCCAGTCAAGGTCTTCACAAAGATCTGCAT 10184 Score = 111 bits (122), Expect = 1e-19 Identities = 163/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || || || ||||| | || ||||| || || |||||||| ||||| ||||||||| Sbjct 10186 CCACCACGGAGACGAAGAACGAGATGAAGGGTTGATTCCTTCTGGATGTTGTAGTCGGAG 10245 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 ||||| || |||| ||||| || || || ||||| || || |||||||| || | ||| Sbjct 10246 AGGGTTCGTCCGTCTTCGAGTTGTTTACCAGCGAAAATGAGTCGCTGTTGATCAGGAGGA 10305 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCAC 41814 | | |||||||||| || || |||| ||| | | | || ||| ||||| || Sbjct 10306 ATACCCTCCTTGTCCTGAATCTTGCTCTTC-ACGTTGTCAATGGTATCGGAGGACTCGAC 10364 Query 41815 CTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 || | || || ||||| || |||| ||||| ||||| || ||||| Sbjct 10365 TTCGAGGGTGATGGTTTTGCCGGTCAAAGTCTTGACGAAGATTTGCAT 10412 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 462303780405600