Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lentinula_20edodes_20[genbank_20GCA_5F001562095.1_202016-02-16] 31 sequences; 46,106,741 total letters Query= NC_001132.2 Length=161773 Score E Sequences producing significant alignments: (Bits) Value seq23 172 6e-38 seq29 156 4e-33 seq31 113 5e-20 >seq23 Length=3600692 Score = 172 bits (190), Expect = 6e-38 Identities = 299/432 (69%), Gaps = 2/432 (0%) Strand=Plus/Plus Query 16961 AGACATGCGAAATCGCAATGTAATCCCTCGTCTCTGCTGATAAGTTCGTTAGAAAATGTC 17020 ||||| ||||||||| |||||| || || |||| |||||| || ||||| ||| | || Sbjct 3498576 AGACACGCGAAATCGGTATGTAAACCTTCATCTCGGCTGATGAGCTCGTTTGAATAAGTT 3498635 Query 17021 AACCCGGGCATCTTTCCTCGTTTCTTTAACCAAAATATCGCGGCGAACGACCCAGAAAAG 17080 | || |||||| || || ||||||||||| || || | ||||||||||||||||| Sbjct 3498636 AGGCCAGGCATCAGGCCGCGCTTCTTTAACCAGAAAATGGAAGCGAACGACCCAGAAAAA 3498695 Query 17081 AATATACCCTCGACGGATGCAAACGCGATTAATCGTTCGGCGTACGTCGCGTC-TTTGTT 17139 || || |||||||| | || || || | |||| || || | || || || ||||| Sbjct 3498696 AAGATTCCCTCGACAGCAGCGAATGCCACCAATCTCTCTGCAAAAGT-GCTTCGTTTGTC 3498754 Query 17140 ACGAATCCATTTCTGCACCCACTCGGCTTTTTGCTTTATGCAATCCATCGTTTCTATGGC 17199 | |||||||| | |||| |||||||| |||| ||||| || |||||||| || Sbjct 3498755 AGATATCCATTTGAGGGCCCAGTCGGCTTTGCGCTTGATGCACGGTATTGTTTCTATTGC 3498814 Query 17200 CTTAAATAATTTCTCTTTTTCCTGTAGGTCGATTATATACGTATCGATGAGTAGGCTGTA 17259 | || | | | || | || || | | || |||||||| || || ||| Sbjct 3498815 GTCGAAGAGATATGCGCGTTGATTAAGATCCTTGACGTATGTATCGATAAGCAGAGAGTA 3498874 Query 17260 CATTTCGGAGTGTATGTTCTCCATGGCTATCTGAAATCCGTAAAAGCATCGGGCTTCCGC 17319 |||| || || | ||| ||||| ||| || || || |||||| | || || || || Sbjct 3498875 AGTTTCAGAATGAACGTTTTCCATCATTATTTGGAACCCATAAAAGTAGCGCGCCTCAGC 3498934 Query 17320 TATTTGAACTTCCACGTAGAATCGTTCCGCTAGATTTTCGTTCACGATGCCGTCGCTCGC 17379 | ||| ||||| | || || ||| ||||||||||||||||| ||||| || Sbjct 3498935 TGCTTGCACTTCGTTTGAAAAGCGCTCCAACAGATTTTCGTTCACGATACCGTCAGAGGC 3498994 Query 17380 GGCGAAAAACGC 17391 ||| || || || Sbjct 3498995 GGCAAAGAATGC 3499006 >seq29 Length=5849119 Score = 156 bits (172), Expect = 4e-33 Identities = 376/566 (66%), Gaps = 15/566 (3%) Strand=Plus/Minus Query 16961 AGACATGCGAAATCGCAATGTAATCCCTCGTCTCTGCTGATAAGTTCGTTAGAAAATGTC 17020 || || ||||| ||| ||| | ||||| || | ||||| || ||||| || || | | Sbjct 5169115 AGGCAGGCGAAGTCGGTATGCATACCCTCATCACGACTGATGAGCTCGTTTGAGAACGCC 5169056 Query 17021 AACCCGGGCATCTTTCCTCGTTTCTTTAACCAAAATATCGCGGCGAACGACCCAGAAAAG 17080 || || ||||| ||| || ||||| | |||||| || | ||||| || ||||| ||| Sbjct 5169055 AAGCCAGGCATTAATCCACGCTTCTTCATCCAAAAGATGGACGCGAAGGAGCCAGAGAAG 5168996 Query 17081 AATATACCCTCGACGGATGCAAACGCGATTAATCGTTCGGCGTACGTCGCGTCTTTGTTA 17140 || || || || || | ||||| || | | || ||| || | || || || || | Sbjct 5168995 AAAATGCCTTCAACAGCAGCAAAGGCTACGAGACGCTCGCCGAAAACCGAGTGTTCGTCA 5168936 Query 17141 CGAATCCATTTCTGCACCCACTCGGCTTTTTGCTTTATGCAATCCATCGTTTCTATGGCC 17200 | ||||| | | | |||||||||| || |||| |||||| || || || || || Sbjct 5168935 CTGATCCAGTGCAGAGCCCACTCGGCCTTGCGCTTGATGCAAGGAATAGTCTCGATAGCA 5168876 Query 17201 TTAAATA--ATTTCTCTTTTTCCTGTAGGTCGATTATATACGTATCGATGAGTAGGCTGT 17258 | ||| | | || | || | | |||| | || || || |||||||| || || Sbjct 5168875 TCAAAAAGGAAATCACGTTCGACAG--GGTCTTTGATGTATGTGTCGATGAGAAGAGAGT 5168818 Query 17259 ACATTTCGGAGTGTATGTTCTCCATGGCTATCTGAAATCCGTAAAAGCATCGGGCTTCCG 17318 | | |||||||| ||||||||||| ||||| || ||||| ||||| || || || | Sbjct 5168817 AAGTCTCGGAGTGAATGTTCTCCATCATAATCTGGAACCCGTAGAAGCAACGTGCCTCAG 5168758 Query 17319 CTATTTGAACTTCCACGTAGAATCGTTCCGCTAGATTTTCGTTCACGATGCCGTCGCTCG 17378 | | || ||||| |||| ||||| ||||| ||||| || ||||| || | Sbjct 5168757 CGACCTGTACTTCGTTCGAGAAGCGTTCGAGAAGATTCTCGTTGACAATGCCATCAGAGG 5168698 Query 17379 CGGCGAAAAACGCCAATATATGCTTAATGAAATATTTTTCGTCCGGTGT-AAGAACGCG- 17436 |||| || ||||| | | | | ||||| | |||| || ||| | | ||| Sbjct 5168697 CGGCAAAGAACGCGAGGACACGGGAGATGAAGAA----TCGTTCGCTGTCATTCAGGCGG 5168642 Query 17437 -----CCAGTCCTTTAAATCTTTGGATATATCCACTTCTTCGGGGGTCCAAAAACTAGCC 17491 |||||| | | ||||| |||| ||||| ||||| | ||||| ||| ||| Sbjct 5168641 TTGTTCCAGTCATGAAGGTCTTTTGATAAATCCATCTCTTCCGCAGTCCAGAAAGAGGCC 5168582 Query 17492 ACTGCCTTTTTATACATATTCCAAAT 17517 | ||||| || ||||| | ||| || Sbjct 5168581 TCGGCCTTCTTGTACATTTGCCATAT 5168556 >seq31 Length=1678028 Score = 113 bits (124), Expect = 5e-20 Identities = 294/441 (67%), Gaps = 8/441 (2%) Strand=Plus/Plus Query 16955 AACATCAGACATGCGAAATCGCAATGTAATCCCTCGTCTCTGCTGATAAGTTCGTTAGAA 17014 || || || ||||| || ||| || | ||| ||||| | |||||||||||||| ||| Sbjct 618607 AAGATAAGGCATGCAAAGTCGGTGTGCATTCCTTCGTCACGACTGATAAGTTCGTTTGAA 618666 Query 17015 AATGTCAACCCGGGCATCTTTCCTCGTTTCTTTAACCAAAATATCGCGGCGAACGACCCA 17074 || |||||||| |||| ||| ||||| || | ||||||||| ||||| || || Sbjct 618667 AAGGTCAACCCAGGCAATAATCCACGTTTTTTGATCCAAAATATGCACGCGAAAGATCCG 618726 Query 17075 GAAAAGAATATACCCTCGACGGATGCAAACGCGATTAATCGTTCGGCGTACGTCGCGTCT 17134 || || || || || |||| || || || || | | |||||| || | || | | Sbjct 618727 GAGAAAAAAATTCCTTCGATGGCTGAGAATGCAACGAGTCGTTCCGCAAAAGTAACTTGA 618786 Query 17135 TTGT-TACGAATCCATTTCTGCACCCACTCGGCTTTTTGCTTTATGCAATCCATCGTTTC 17193 | || | || |||||| | | |||| | |||||||| || |||||| |||||||| Sbjct 618787 TCGTCTTCG-ATCCATCTTAGTGCCCATGCCGCTTTTTGTTTAATGCAAGGAATCGTTTC 618845 Query 17194 TATGGCCTTAAATAATTTCTCTTTTTCCTGTAGGTCGATTATATACGTATCGATGAGTAG 17253 || | | || || | ||| | | || |||||||| | || || | Sbjct 618846 GATAGAACTGAACAAGAATGATCGTTCGAATGGATCTTGGATATACGTTTGAATCAGCAA 618905 Query 17254 GCTGTACATTTCGGAGTGTATGTTCTCCATGGCTATCTGAAATCCGTAAAAGCATCGGGC 17313 || |||| || || ||||| ||||| | ||| ||||| || ||| |||| || Sbjct 618906 AGAATAAGTTTCTGAATGGATGTTTTCCATCATTGACTGGAATCCATAGAAGGATCGAGC 618965 Query 17314 TTCCGCTATTTGAACTTCCACGTAGAATCGTTCCG---CTAGATTTTCGTTCACGATGCC 17370 || || | |||| || ||| |||| || || | || |||||||| || || || Sbjct 618966 CTCAGCGACCTGAA-TTTCAC-TAGAGAAGTGACGGATCAAG-TTTTCGTTTACAATACC 619022 Query 17371 GTCGCTCGCGGCGAAAAACGC 17391 |||| ||| |||||||| || Sbjct 619023 GTCGGACGCAGCGAAAAATGC 619043 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 517545399451080