Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lentinula_20edodes_20[genbank_20GCA_5F001562095.1_202016-02-16] 31 sequences; 46,106,741 total letters Query= NC_001266.1 Length=159857 Score E Sequences producing significant alignments: (Bits) Value seq23 168 7e-37 seq31 143 3e-29 >seq23 Length=3600692 Score = 168 bits (186), Expect = 7e-37 Identities = 310/452 (69%), Gaps = 2/452 (0%) Strand=Plus/Plus Query 16199 AGACACGCGAAGTCGCAATGTAGTCCTTCGTCTCTGCTGATAAGTTCGTTGGAAAAAGTT 16258 ||||||||||| ||| ||||| ||||| |||| |||||| || ||||| ||| ||||| Sbjct 3498576 AGACACGCGAAATCGGTATGTAAACCTTCATCTCGGCTGATGAGCTCGTTTGAATAAGTT 3498635 Query 16259 AACCCTGGCATTTTTCCTCGTTTCTTTAACCAGAATATCGCAGCAAATGACCCCGAAAAG 16318 | || ||||| || || |||||||||||||| || | ||| || ||||| ||||| Sbjct 3498636 AGGCCAGGCATCAGGCCGCGCTTCTTTAACCAGAAAATGGAAGCGAACGACCCAGAAAAA 3498695 Query 16319 AATATACCCTCAACAGATGCAAAAGCGATTAATCGTTCCGCGTACGTAGCATC-TTTATT 16377 || || ||||| |||| || || || | |||| || || | || || || ||| | Sbjct 3498696 AAGATTCCCTCGACAGCAGCGAATGCCACCAATCTCTCTGCAAAAGT-GCTTCGTTTGTC 3498754 Query 16378 ACGAATCCATTTCTGTACCCATTCGGCTTTTTGTTTTATACAATCCATCGTTTCTATGGC 16437 | |||||||| | |||| |||||||| | || || || || |||||||| || Sbjct 3498755 AGATATCCATTTGAGGGCCCAGTCGGCTTTGCGCTTGATGCACGGTATTGTTTCTATTGC 3498814 Query 16438 CTTAAACAATTTCTCTTTTTCCTGAATATCGATTATATACGTATCAATCAGTAAACTGTA 16497 | || | | | || | || ||| | | || ||||| || || | | ||| Sbjct 3498815 GTCGAAGAGATATGCGCGTTGATTAAGATCCTTGACGTATGTATCGATAAGCAGAGAGTA 3498874 Query 16498 CATTTCTGAGTGTATGTTCTCTATGGCTATCTGAAATCCATAGAAGCATCGAGCCTCCGC 16557 |||| || || | ||| || || ||| || || ||||| ||| | || ||||| || Sbjct 3498875 AGTTTCAGAATGAACGTTTTCCATCATTATTTGGAACCCATAAAAGTAGCGCGCCTCAGC 3498934 Query 16558 TATTTGTACTTCCACGTAAAATCGTTCCGCCAGGTTCTCATTCACGATACCGTCACTTGC 16617 | ||| ||||| |||| || ||| ||| || || ||||||||||||||| || Sbjct 3498935 TGCTTGCACTTCGTTTGAAAAGCGCTCCAACAGATTTTCGTTCACGATACCGTCAGAGGC 3498994 Query 16618 AGCAAAAAACGCCAATATGTGCTTAATGAAAT 16649 ||||| || || | | ||| | ||||||| Sbjct 3498995 GGCAAAGAATGCAAGGACGTGGGTGATGAAAT 3499026 >seq31 Length=1678028 Score = 143 bits (158), Expect = 3e-29 Identities = 304/443 (69%), Gaps = 12/443 (3%) Strand=Plus/Plus Query 16193 AACATTAGACACGCGAAGTCGCAATGTAGTCCTTCGTCTCTGCTGATAAGTTCGTTGGAA 16252 || || || || || |||||| || | ||||||||| | |||||||||||||| ||| Sbjct 618607 AAGATAAGGCATGCAAAGTCGGTGTGCATTCCTTCGTCACGACTGATAAGTTCGTTTGAA 618666 Query 16253 AAAGTTAACCCTGGCATTTTTCCTCGTTTCTTTAACCAGAATATCGCA-GCAAATGACCC 16311 || || ||||| |||| | ||| ||||| || | ||| ||||| ||| || || || || Sbjct 618667 AAGGTCAACCCAGGCAATAATCCACGTTTTTTGATCCAAAATAT-GCACGCGAAAGATCC 618725 Query 16312 CGAAAAGAATATACCCTCAACAGATGCAAAAGCGATTAATCGTTCCGCGTACGTAGCATC 16371 || || || || || || | | || || || | | ||||||||| | ||| | | Sbjct 618726 GGAGAAAAAAATTCCTTCGATGGCTGAGAATGCAACGAGTCGTTCCGCAAAAGTAACTTG 618785 Query 16372 TTTAT-TACGAATCCATTTCTGTACCCATTCGGCTTTTTGTTTTATACAATCCATCGTTT 16430 | | | || |||||| | || ||||| | ||||||||||| || ||| ||||||| Sbjct 618786 ATCGTCTTCG-ATCCATCTTAGTGCCCATGCCGCTTTTTGTTTAATGCAAGGAATCGTTT 618844 Query 16431 CTATGGCCTTAAACAATTTCTCTTTTTCCTGAAT--ATCGATTATATACGTATCAATCAG 16488 | || | | ||||| | ||| |||| ||| |||||||| | |||||| Sbjct 618845 CGATAGAACTGAACAAGAATGATCGTTC--GAATGGATCTTGGATATACGTTTGAATCAG 618902 Query 16489 TAAACTGTACATTTCTGAGTGTATGTTCTCTATGGCTATCTGAAATCCATAGAAGCATCG 16548 ||| || ||||||| || ||||| || || | ||| |||||||||||| |||| Sbjct 618903 CAAAGAATAAGTTTCTGAATGGATGTTTTCCATCATTGACTGGAATCCATAGAAGGATCG 618962 Query 16549 AGCCTCCGCTATTTGTACTTCCACGTAAAATCGTTCCG--CCAGGTTCTCATTCACGATA 16606 |||||| || | || | || ||| || | || || || ||| || || || ||| Sbjct 618963 AGCCTCAGCGACCTG-AATTTCAC-TAGAGAAGTGACGGATCAAGTTTTCGTTTACAATA 619020 Query 16607 CCGTCACTTGCAGCAAAAAACGC 16629 ||||| ||||| ||||| || Sbjct 619021 CCGTCGGACGCAGCGAAAAATGC 619043 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 511414201826920