Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lentinula_20edodes_20[genbank_20GCA_5F001562095.1_202016-02-16] 31 sequences; 46,106,741 total letters Query= NC_001611.1 Length=185578 Score E Sequences producing significant alignments: (Bits) Value seq31 120 4e-22 seq1 82.4 9e-11 >seq31 Length=1678028 Score = 120 bits (132), Expect = 4e-22 Identities = 378/572 (66%), Gaps = 24/572 (4%) Strand=Plus/Plus Query 24135 CATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGT 24194 ||||| || ||| ||| | || ||||| | ||| || | |||||| ||||| || | Sbjct 618616 CATGCAAAGTCGGTGTGCATTCCTTCGTCACGACTGATAAGTTCGTTTGAAAAGGTCAAC 618675 Query 24195 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAA 24254 || |||| || ||||| ||||| | |||||||||| |||| || ||||| || || ||| Sbjct 618676 CCAGGCAATAATCCACGTTTTTTGATCCAAAATATGCACGCGAAAGATCCGGAGAAAAAA 618735 Query 24255 ATTCCTTCTACTGCCGCAAAGGCAATAAGTCTTTCTCCA----TAACCGGCGCTGTCATG 24310 |||||||| | || | || |||| |||| ||| || |||| | | ||| | Sbjct 618736 ATTCCTTCGATGGCTGAGAATGCAACGAGTCGTTCCGCAAAAGTAACTTGATC-GTCTTC 618794 Query 24311 TATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTATAGCA-T 24369 ||||| || | ||||| | || || | ||| | ||||| || || || |||| | | Sbjct 618795 GATCCATCTTAGTGCCCATGCCGCTTTTTGTTTAATGCAAGGAATCGTTTCGATAGAACT 618854 Query 24370 TAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCAATCA--AAAGACTATA 24427 || ||| | | || | | ||||| | ||| || | ||||| ||||| ||| Sbjct 618855 GAACAAGAATGATCGTTCGAAT-GGATCTTGGATATACGTTTGAATCAGCAAAGA--ATA 618911 Query 24428 CATTTCCGAATGAATGTTTTCAATGGCCATT---TGAAATCCGTAGAAACATCTAGCCTC 24484 |||| ||||| |||||||| || |||| || ||||| ||||| ||| |||||| Sbjct 618912 AGTTTCTGAATGGATGTTTTCCAT---CATTGACTGGAATCCATAGAAGGATCGAGCCTC 618968 Query 24485 GGTAATCTGTACTTCTATACAAAATCGTTCTGCT-AAATTTTCATTCACTATTCCGTCAC 24543 | | ||| | ||| || | || | | | | || ||||| || || || ||||| Sbjct 618969 AGCGACCTGAATTTCACTAGAGAAGTG-ACGGATCAAGTTTTCGTTTACAATACCGTCGG 619027 Query 24544 TGGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTG-GT--GTTAGTT 24600 || || ||||| || | ||| | | ||| | |||| || || | | | Sbjct 619028 ACGCAGCGAAAAATGCTAGCACACGAGCCGTGAAAAAGCGCTCGTTTGCGTTCATGCGGT 619087 Query 24601 TATTCCAATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCT 24660 | ||||| || | | ||| || || | || | ||||||| ||||| || || |||| Sbjct 619088 TGTTCCAGTCGTGCAAATCGTTTGAAAGGTCTATTTCTTCCGTAGTCCAGAAGGAAGCCT 619147 Query 24661 CTGCCTTTTTATACATATTCCAGA--TGTCAT 24690 | || ||||| ||| | ||||| |||||| Sbjct 619148 CAGCTTTTTTGTACCTTCGCCAGATCTGTCAT 619179 Score = 84.2 bits (92), Expect = 3e-11 Identities = 128/180 (71%), Gaps = 2/180 (1%) Strand=Plus/Plus Query 23859 ACACGTTTTTCGAAAAAATTAGTTTTACCTTCTAATGATATATTTTCCATGAAATCGGAT 23918 || || ||||| |||||||| ||||| ||||| | ||||| | ||||||||||| | Sbjct 618286 ACTCGCTTTTCAAAAAAATTTGTTTTTCCTTCCAGAGATATCATGTCCATGAAATCAAAA 618345 Query 23919 GGATTGGTAACATTATAGATTCTTTTAAATCCCAA-TTCAGAAATCAATCTATCTGCGAC 23977 || || | || || || | | || | |||||| | || || || || ||| || | Sbjct 618346 GGGTTTCTGACGTTGTATAAT-TTGTTGTTCCCAAGTGCATTAAGCAGTCCATCCGCAAT 618404 Query 23978 AAACTCCATATATGTTTTCATCATTTCACAATTCATTCCTATAAGTTTAACTGGAAGAGC 24037 ||||| || ||| | ||||| ||| ||||||||||||| | | |||||||| ||| Sbjct 618405 GAACTCGATGTATATGCACATCAGCTCATAATTCATTCCTATCAAGTCAACTGGAATAGC 618464 >seq1 Length=5311644 Score = 82.4 bits (90), Expect = 9e-11 Identities = 132/185 (71%), Gaps = 6/185 (3%) Strand=Plus/Minus Query 52844 AGATAGTACATTCCCGTTTTTAGACCGAGACTCCATCCGTAAAAATGCATACTTGTTAGT 52903 ||||| ||||| || ||||| | || |||||||| |||||||||||||||||||| Sbjct 5027693 AGATAATACATCCCGGTTTTCAAGCCCTTTCTCCATCCATAAAAATGCATACTTGTTAGC 5027634 Query 52904 TTGGAATAAC--TCGGATCTGCTATATGGATATTCATAGAT-TGACTTTGATCGATGAAG 52960 | || || ||| || | ||| ||||||| || | |||||||| ||| || Sbjct 5027633 T--GACCCACAGATGGAGAGGCAAGATGAATATTCA-AGCTCTGACTTTGGCAGATAAAC 5027577 Query 52961 GCTCCCCTGTCTGCAGCCATTTTTATGATCGTCTTTTGTGGAATTTCCCAAATAGTTTTA 53020 || || | || | || | | | ||||| ||||| ||||||||||||| |||||| Sbjct 5027576 GCGCCACGATCCACGGCAAAATCCAAAATCGTTTTTTGAGGAATTTCCCAAACCGTTTTA 5027517 Query 53021 TAAAC 53025 ||||| Sbjct 5027516 TAAAC 5027512 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 593721369932880