Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lentinula_20edodes_20[genbank_20GCA_5F001562095.1_202016-02-16] 31 sequences; 46,106,741 total letters Query= NC_001973.1 Length=161046 Score E Sequences producing significant alignments: (Bits) Value seq29 244 1e-59 seq23 196 5e-45 seq2 114 1e-20 >seq29 Length=5849119 Score = 244 bits (270), Expect = 1e-59 Identities = 400/572 (70%), Gaps = 11/572 (2%) Strand=Plus/Plus Query 116636 ATGTGGCGCATGTACAAAAAGGCCGAGGCGTCGTTCTGGACCGTCGAGGAGGTGGACCTG 116695 || |||| |||||||| ||||||||||| || |||||||| | || ||| |||| | Sbjct 5168556 ATATGGCAAATGTACAAGAAGGCCGAGGCCTCTTTCTGGACTGCGGAAGAGATGGATTTA 5168615 Query 116696 TCCAAGGACACGAGCGACTGGGAG---CGCTTGAACGACAACGAGCGCCATTTCATCAAG 116752 || || ||| |||||| | ||| |||| |||| ||| || |||||| Sbjct 5168616 TCAAAAGACCTTCATGACTGGAACAACCGCCTGAATGACAGCGAACGATTCTTCATCTCC 5168675 Query 116753 CACGTGCTGGCCTTTTTCGCCGCCAGCGACGGCATCGTCAACGAGAATCTGGTCGAGCGT 116812 | || || || || || |||||| || ||||| |||||||||||||| |||| || Sbjct 5168676 CGTGTCCTCGCGTTCTTTGCCGCCTCTGATGGCATTGTCAACGAGAATCTTCTCGAACGC 5168735 Query 116813 TTCGCTCAGGAGGTGCAGGTGGCCGAGGCGCGGTGCTTCTACGGCTTTCAGATCGCCATG 116872 ||| | | || || ||||| || ||||| || ||||||||||| || ||||| ||| Sbjct 5168736 TTCTCGAACGAAGTACAGGTCGCTGAGGCACGTTGCTTCTACGGGTTCCAGATTATGATG 5168795 Query 116873 GAGAACGTGCACTCGGAAATGTATTCGACCCTCATCGACACGTACGT----GCGCTCTTC 116928 |||||| | ||||| || | || || ||||||||||| ||| | | | || Sbjct 5168796 GAGAACATTCACTCCGAGACTTACTCTCTTCTCATCGACACATACATCAAAGACCCTGTC 5168855 Query 116929 GGAGGAGAAGCTCCGTTTGTTGAACGCCATCGAGACGATGCCGTGCGTCAAAGAGAAGGC 116988 | | | | | ||| || ||| | || |||||||| || || ||| |||| ||||| Sbjct 5168856 GAACGTG-ATTTCC--TTTTTG-ATGCTATCGAGACTATTCCTTGCATCAAGCGCAAGGC 5168911 Query 116989 CGAGTGGGCGCTGCGCTGGATCGCCGGCAGAGAGGCCGCCTTCGGCGAGCGCCTGGTGGC 117048 ||||||||| |||| ||||||| | | | | | | ||||||||||| || || || Sbjct 5168912 CGAGTGGGCTCTGCACTGGATCAGTGACGAACACTCGGTTTTCGGCGAGCGTCTCGTAGC 5168971 Query 117049 CTTCGCGGCCGTCGAGGGCGTCTTCTTTTCGGGCAGTTTCGCCGCCATATTTTGGCTCAA 117108 ||| || || || || ||| | ||||| || ||| ||||| |||| |||||| | || Sbjct 5168972 CTTTGCTGCTGTTGAAGGCATTTTCTTCTCTGGCTCCTTCGCGTCCATCTTTTGGATGAA 5169031 Query 117109 GAAACGCGGCCTCATGCCCGGCCTGACTTTCAGCAACGAGCTCATCTCCAGGGACGAGGG 117168 ||| || || | ||||| ||| || | ||| |||||||||||| | || ||||| Sbjct 5169032 GAAGCGTGGATTAATGCCTGGCTTGGCGTTCTCAAACGAGCTCATCAGTCGTGATGAGGG 5169091 Query 117169 TCTGCATTGCGACTTTGCCTGTTTGCTGTTCA 117200 | ||||| |||||| ||||| | || |||| Sbjct 5169092 TATGCATACCGACTTCGCCTGCCTTCTCTTCA 5169123 >seq23 Length=3600692 Score = 196 bits (216), Expect = 5e-45 Identities = 385/561 (69%), Gaps = 15/561 (3%) Strand=Plus/Minus Query 116639 TGGCGCATGTACAAAAAGGCCGAGGCGTCGTTCTGGACCGTCGAGGAGGTGGACCTGTCC 116698 |||| |||||||| || || || || |||||||||||| || ||| | ||||| | Sbjct 3499132 TGGCAGATGTACAAGAAAGCAGAAGCATCGTTCTGGACCTCGGAAGAGATTGACCTCACT 3499073 Query 116699 AAGGACACGAGCGACTGG---GAGCGCTTGAACGACAACGAGCGCCATTTCATCAAGCAC 116755 | || ||||||| ||||| || ||| | ||||||| |||||||||| ||| Sbjct 3499072 CATGATCTTGTCGACTGGAACGAGCGATTAAACAATGACGAGCGTCATTTCATCACCCAC 3499013 Query 116756 GTGCTGGCCTTTTTCGCCGCCAGCGACGGCATCGTCAACGAGAATCTGGTCGAGCGTTTC 116815 || || || || || |||||| ||||| ||||| ||||| |||||| | ||||| || Sbjct 3499012 GTCCTTGCATTCTTTGCCGCCTCTGACGGTATCGTGAACGAAAATCTGTTGGAGCGCTTT 3498953 Query 116816 GCTCAGGAGGTGCAGGTGGCCGAGGCGCGGTGCTTCTACGGCTTTCAGATCGCCATGGAG 116875 | | || ||||| | || |||||||| | ||| || || || || || ||||| Sbjct 3498952 TCAAACGAAGTGCAAGCAGCTGAGGCGCGCTACTTTTATGGGTTCCAAATAATGATGGAA 3498893 Query 116876 AACGTGCACTCGGAAATGTATTCGACCCTCATCGACACGTACGT--GCGCTCTTCGGAGG 116933 ||||| || || |||| || || || ||||| || ||||| | |||| | Sbjct 3498892 AACGTTCATTCTGAAACTTACTCTCTGCTTATCGATACATACGTCAAGGATCTT---AAT 3498836 Query 116934 AGAAGCTC-CGTTTGTTGAACGCCATCGAGACGATGCCGTGCGTCAAAGAGAAGGCCGAG 116992 | || | | | || |||| || || || || |||||| |||| || ||||| Sbjct 3498835 CAACGCGCATATCTCTTCGACGCAATAGAAACAATACCGTGCATCAAGCGCAAAGCCGAC 3498776 Query 116993 TGGGCGCTGCGCTGGATCGCCGGCAGA-GAGGCCGCCTTCGGCGAGCGCCTGGTGGCCTT 117051 ||||| || ||||| | | || | || | | | || | ||| | ||||||| || Sbjct 3498775 TGGGCCCTCAAATGGATATCTGACAAACGAAG-CACTTTTGCAGAGAGATTGGTGGCATT 3498717 Query 117052 CGCGGCCGTCGAGGGCGTCTTCTTTTCGGGCAGTTTCGCCGCCATATTTTGGCTCAAGAA 117111 ||| || |||||||| |||| ||||| || ||||| |||| || ||| | ||||| Sbjct 3498716 CGCTGCTGTCGAGGGAATCTTTTTTTCTGGGTCGTTCGCTTCCATTTTCTGGTTAAAGAA 3498657 Query 117112 ACGCGGCCTCATGCCCGGCCTGACT--TTCAGCAACGAGCTCATCTCCAGGGACGAGGGT 117169 |||||||| ||||| ||||| ||| |||| |||||||||||| | | || || ||| Sbjct 3498656 GCGCGGCCTGATGCCTGGCCTAACTTATTCA--AACGAGCTCATCAGCCGAGATGAAGGT 3498599 Query 117170 CTGCATTGCGACTTTGCCTGT 117190 | ||| ||| || || ||| Sbjct 3498598 TTACATACCGATTTCGCGTGT 3498578 >seq2 Length=1585523 Score = 114 bits (126), Expect = 1e-20 Identities = 153/210 (73%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 |||||||| || || || || |||||||||||||| ||||| | || ||||| | | Sbjct 172297 ATGCAAATCTTTGTTAAGACCCTCACGGGCAAAACGATCACTTTGGAGGTCGAGTCTTCA 172238 Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 |||| | | |||| | |||| || || | || || |||||||| || | || || Sbjct 172237 GACACGATCGACAACG-TGAAGGCCAAGATACAGGATAAGGAGGGCATTCCTCCCGATCA 172179 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 |||||||| |||| ||| ||||| ||||| || || | |||||||| |||||||| Sbjct 172178 ACAACGACTAATCTTCGCCGGCAAGCAGCTCGAAGATGGACGCACCCTTTCTGACTACAA 172119 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGT 40898 ||| ||||||||| | || || || || || Sbjct 172118 CATTCAGAAGGAGTCAACCCTTCACCTTGT 172089 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 515219000352560