Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lentinula_20edodes_20[genbank_20GCA_5F001562095.1_202016-02-16] 31 sequences; 46,106,741 total letters Query= NC_002169.1 Length=135611 Score E Sequences producing significant alignments: (Bits) Value seq2 109 5e-19 seq16 86.0 5e-12 >seq2 Length=1585523 Score = 109 bits (120), Expect = 5e-19 Identities = 147/202 (73%), Gaps = 2/202 (1%) Strand=Plus/Plus Query 118542 GTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTGTTTTCCA 118601 || ||||| || ||||||||||| || | ||||| ||| |||||||| || || Sbjct 172101 GTTGACTCCTTCTGAATGTTGTAGTCAGAAAGGGTGCGTCCATCTTCGAGCTGCTTGCCG 172160 Query 118602 GCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGT-CTGTAATTTTTTGTTT 118660 ||| |||| || || || ||||||||||| ||||||||||| | |||| || || || Sbjct 172161 GCGAAGATTAGTCGTTGTTGATCGGGAGGAATGCCCTCCTTATCCTGT-ATCTTGGCCTT 172219 Query 118661 AACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGTCAGAGT 118720 || | |||| ||||| | ||||||||| | || | ||||||||| || || || Sbjct 172220 CACGTTGTCGATCGTGTCTGAAGACTCGACCTCCAAAGTGATCGTTTTGCCCGTGAGGGT 172279 Query 118721 TTTTACAAAAATCTGCATGGCT 118742 || ||||| || |||||| || Sbjct 172280 CTTAACAAAGATTTGCATGCCT 172301 Score = 104 bits (114), Expect = 2e-17 Identities = 151/211 (72%), Gaps = 2/211 (1%) Strand=Plus/Minus Query 118529 CACCAAG-TGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCT 118587 ||||||| || | ||||||||||| |||||||| || || | || || ||||| Sbjct 1022618 CACCAAGATGAAGGGTAGACTCTTTCTGAATGTTATAGTCAGAAAGCGTACGACCATCCT 1022559 Query 118588 CGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTG 118647 | | ||| |||||||| |||| | |||||| || |||||||| ||||| || ||||| Sbjct 1022558 CCAACTGCTTTCCAGCAAAGATCAAACGCTGTTGGTCGGGAGGAATGCCTTCTTTGTCCT 1022499 Query 118648 TAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTT 118707 ||| ||| || || | |||| ||||| | |||||| || | || | ||| | Sbjct 1022498 GAATCTTTGCCTTGACATTGTCGATAGTGTCAGAAGACTCGACTTCAAGAGTGATCGTCT 1022439 Query 118708 TGCCGGTCAGAGTT-TTTACAAAAATCTGCA 118737 | ||||||| ||| || ||||| ||||||| Sbjct 1022438 TTCCGGTCAATGTTCTTCACAAAGATCTGCA 1022408 >seq16 Length=279175 Score = 86.0 bits (94), Expect = 5e-12 Identities = 80/102 (78%), Gaps = 0/102 (0%) Strand=Plus/Plus Query 118526 CAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATC 118585 || ||| ||||| | || || ||||| |||||||||||||| |||| ||| || ||| Sbjct 135727 CAGCACTAAGTGAAGGGTGGATTCTTTCTGAATGTTGTAATCACTCAGAGTACGTCCATC 135786 Query 118586 CTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGG 118627 ||| || |||||||| ||| | ||||| ||||| ||||| || Sbjct 135787 CTCAAGTTGTTTTCCGGCGAAAATGAGTCGCTGTTGATCAGG 135828 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433830236093452