Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lentinula_20edodes_20[genbank_20GCA_5F001562095.1_202016-02-16] 31 sequences; 46,106,741 total letters Query= NC_002642.1 Length=144575 Score E Sequences producing significant alignments: (Bits) Value seq9 116 3e-21 seq31 89.7 5e-13 >seq9 Length=652519 Score = 116 bits (128), Expect = 3e-21 Identities = 239/351 (68%), Gaps = 11/351 (3%) Strand=Plus/Minus Query 16234 ACAAGCAAAATCACAATGCAATCCTTCGTC-CCTACTTATTAACTCGTTTGAAAATGTAA 16292 ||| ||||| ||| ||||| |||||| || || || || | || ||||| || || | Sbjct 464842 ACATGCAAATTCAGTATGCATTCCTTCATCGCCGGCTGATGAGTTCATTTGAGAACGTCA 464783 Query 16293 GACCTGGCATTAGTCCTCGTTTTTTAATCCAAAATATAGCGGCAAATGAACCAGAAAAGA 16352 ||| ||||| | ||||| || || ||||||||||| |||||| || ||||||| | Sbjct 464782 AACCCGGCATCAACCCTCGCTTCTTCATCCAAAATATGCAGGCAAACGACGCAGAAAAAA 464723 Query 16353 ATATACCTTCAACTGCGGCAAATGCAACCAATCGCTCACCGTACGT---TCTAtttttac 16409 |||| ||||| | || |||||||| ||||| ||||| | | || |||| ||| Sbjct 464722 ATATGCCTTCGATCGCTGCAAATGCTACCAAACGCTCTGCAAATGTGAATCTA---TTAT 464666 Query 16410 tttctatccattttttagcccaatttgctttttgtttAACACAGTTCATGTTCTCTATTG 16469 || ||||||| ||||| ||||||||| ||||| || || | || || | Sbjct 464665 CTTGAATCCATTGAAGCGCCCATTTTGCTTTTCTTTTAATGCACGGAATAGTTTCAATAG 464606 Query 16470 CATTAAATAAATAAtttttttCTTTG--CTATCTAAAATATAAGTATCTATTAGTAAACT 16527 || ||||| || || || |||| |||||| || | || || ||| Sbjct 464605 AGTTGAATAA--CATCGAACGCTCTGGAGCATCTCGAATATAGGTTTGAATAAGCAAAGA 464548 Query 16528 ATACATTTCTGAATGAATATTCTCCATTGCTATCTGAAAACCATAAAAGCA 16578 || |||| ||||||||||| ||||| ||||| |||||||| || || Sbjct 464547 GTAGGTTTCAGAATGAATATTTTCCATCATAATCTGGAAACCATAGAAACA 464497 >seq31 Length=1678028 Score = 89.7 bits (98), Expect = 5e-13 Identities = 225/340 (66%), Gaps = 4/340 (1%) Strand=Plus/Plus Query 16250 TGCAATCCTTCGTCCCTACTTATTAACTCGTTTGAAAATGTAAGACCTGGCATTAGTCCT 16309 |||| ||||||||| | ||| || | ||||||||||| || | || |||| || ||| Sbjct 618631 TGCATTCCTTCGTCACGACTGATAAGTTCGTTTGAAAAGGTCAACCCAGGCAATAATCCA 618690 Query 16310 CGTTTTTTAATCCAAAATATAGCGGCAAATGAACCAGAAAAGAATATACCTTCAACTGCG 16369 |||||||| ||||||||||| || || || || || || || || ||||| | || Sbjct 618691 CGTTTTTTGATCCAAAATATGCACGCGAAAGATCCGGAGAAAAAAATTCCTTCGATGGCT 618750 Query 16370 GCAAATGCAACCAATCGCTCACCGTACGTTCTAtttttactttctatccattttttagcc 16429 | |||||||| | ||| || | | || | | ||| |||||| || ||| Sbjct 618751 GAGAATGCAACGAGTCGTTCCGCAAAAGTAACTTGATCGTCTTCGATCCATCTTAGTGCC 618810 Query 16430 caatttgctttttgtttAACACAGTTCATGTTCTCTATTGCATTAAATA--AATAAtttt 16487 || ||||||||||||| || || | || || | | | || | ||| || | Sbjct 618811 CATGCCGCTTTTTGTTTAATGCAAGGAATCGTTTCGATAGAACTGAACAAGAATGATCGT 618870 Query 16488 tttCTTTGCTATCTAAAATATAAGTATCTATTAGTAAACTATACATTTCTGAATGAATAT 16547 | | | |||| ||||| || | || || ||| ||| |||||||||| || | Sbjct 618871 TCGAATGG--ATCTTGGATATACGTTTGAATCAGCAAAGAATAAGTTTCTGAATGGATGT 618928 Query 16548 TCTCCATTGCTATCTGAAAACCATAAAAGCATCTAGCTTC 16587 | ||||| | ||| || ||||| ||| ||| ||| || Sbjct 618929 TTTCCATCATTGACTGGAATCCATAGAAGGATCGAGCCTC 618968 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 462511820776600