Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lentinula_20edodes_20[genbank_20GCA_5F001562095.1_202016-02-16] 31 sequences; 46,106,741 total letters Query= NC_003310.1 Length=196858 Score E Sequences producing significant alignments: (Bits) Value seq29 190 3e-43 seq23 163 4e-35 seq31 111 2e-19 >seq29 Length=5849119 Score = 190 bits (210), Expect = 3e-43 Identities = 387/568 (68%), Gaps = 9/568 (2%) Strand=Plus/Minus Query 33582 CATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAATTCGTTAGAAAACGTGAGT 33641 || ||||| ||| |||| |||||| || | ||| || | ||||| || |||| | Sbjct 5169112 CAGGCGAAGTCGGTATGCATACCCTCATCACGACTGATGAGCTCGTTTGAGAACGCCAAG 5169053 Query 33642 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCGGAAAAGAAG 33701 || ||||||| |||||||| || | |||||| ||||| ||||| || || || ||||| Sbjct 5169052 CCAGGCATTAATCCACGCTTCTTCATCCAAAAGATGGACGCGAAGGAGCCAGAGAAGAAA 5168993 Query 33702 ATTCCTTCTACTGCAGCAAAGGCAATAAGTCTCTCTCC-ATAACCG-GCGCT-GTCATGT 33758 || ||||| || ||||||||||| | || | ||| || | ||||| | | | |||| Sbjct 5168992 ATGCCTTCAACAGCAGCAAAGGCTACGAGACGCTCGCCGAAAACCGAGTGTTCGTCACTG 5168933 Query 33759 ATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTA 33818 ||||| | ||||||| |||||||| || | ||||| || || || || |||| | Sbjct 5168932 ATCCAGTGCAGAGCCCACTCGGCCTTGCGCTTGATGCAAGGAATAGTCTCGATAGCATCA 5168873 Query 33819 AAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATACATT 33878 || || | | ||| | ||||| | || || ||||| | |||| || | Sbjct 5168872 AAAAGGAAATCACGTTCGACAGGGTCTTTGATGTATGTGTCGATGAGAAGAGAGTAAGTC 5168813 Query 33879 TCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATC 33938 || || |||||||| || || ||||| || |||||||| || | ||||| | | | Sbjct 5168812 TCGGAGTGAATGTTCTCCATCATAATCTGGAACCCGTAGAAGCAACGTGCCTCAGCGACC 5168753 Query 33939 TGCACTTCTGTACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCATCACTGGCTGCA 33998 || ||||| | | || ||||| | ||| || || || || |||||| ||| ||| Sbjct 5168752 TGTACTTCGTTCGAGAAGCGTTCGAGAAGATTCTCGTTGACAATGCCATCAGAGGCGGCA 5168693 Query 33999 AAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTT----AGTTTATTCCA 34054 || ||||| | ||| | || || || |||| ||| || | || ||||| Sbjct 5168692 AAGAACGCGAGGACACGGGAGATGAAGAATCGTTCG-CTGTCATTCAGGCGGTTGTTCCA 5168634 Query 34055 ATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTT 34114 |||| | ||||| |||| ||||| |||||| | ||||| || || ||||| ||||| Sbjct 5168633 GTCATGAAGGTCTTTTGATAAATCCATCTCTTCCGCAGTCCAGAAAGAGGCCTCGGCCTT 5168574 Query 34115 TTTATACATATTCCAGATGTCATGATAT 34142 || ||||| | ||| || | || |||| Sbjct 5168573 CTTGTACATTTGCCATATCTGAT-ATAT 5168547 >seq23 Length=3600692 Score = 163 bits (180), Expect = 4e-35 Identities = 372/555 (67%), Gaps = 6/555 (1%) Strand=Plus/Plus Query 33581 ACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAATTCGTTAGAAAACGTGAG 33640 ||| ||||||||| || | ||| || |||| || || | ||||| ||| | || || Sbjct 3498578 ACACGCGAAATCGGTATGTAAACCTTCATCTCGGCTGATGAGCTCGTTTGAATAAGTTAG 3498637 Query 33641 TCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCGGAAAAGAA 33700 || ||||| ||||| ||||| || | ||| || ||||||||||| || || ||||| || Sbjct 3498638 GCCAGGCATCAGGCCGCGCTTCTTTAACCAGAAAATGGAAGCGAACGACCCAGAAAAAAA 3498697 Query 33701 GATTCCTTCTACTGCAGCAAAGGCAATAAGTCTCTCTCCATAA--CCGGCG-CTGTCATG 33757 |||||| || || ||||| || || | | ||||||| || || | || ||||| Sbjct 3498698 GATTCCCTCGACAGCAGCGAATGCCACCAATCTCTCTGCAAAAGTGCTTCGTTTGTCAGA 3498757 Query 33758 TATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATT 33817 |||||| || | ||||| ||||| || || | || || || |||||||| || | Sbjct 3498758 TATCCATTTGAGGGCCCAGTCGGCTTTGCGCTTGATGCACGGTATTGTTTCTATTGCGTC 3498817 Query 33818 AAAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATACAT 33877 |||||||| || |||| ||| || || || |||||||| | ||| || | Sbjct 3498818 GAAGAGATATGCGCGTTGATTAAGATCCTTGACGTATGTATCGATAAGCAGAGAGTAAGT 3498877 Query 33878 TTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTAAT 33937 ||| ||||||| |||||| || || || || || || || | | ||||| | Sbjct 3498878 TTCAGAATGAACGTTTTCCATCATTATTTGGAACCCATAAAAGTAGCGCGCCTCAGCTGC 3498937 Query 33938 CTGCACTTCTGTACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCATCACTGGCTGC 33997 |||||||| | |||| || || | |||||| ||||| || || ||| ||| || Sbjct 3498938 TTGCACTTCGTTTGAAAAGCGCTCCAACAGATTTTCGTTCACGATACCGTCAGAGGCGGC 3498997 Query 33998 AAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTC-TGGTGT--TAGTTTATTCCA 34054 ||| || || | || || | || |||| ||||| | || | | | | ||||| Sbjct 3498998 AAAGAATGCAAGGACGTGGGTGATGAAATGACGCTCGTCATTGTTTAATCGCTCGTTCCA 3499057 Query 34055 ATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTT 34114 || | ||| | || | || | |||||| ||||| || ||||| ||||| || Sbjct 3499058 GTCGACAAGATCATGAGTGAGGTCAATCTCTTCCGAGGTCCAGAACGATGCTTCTGCTTT 3499117 Query 34115 TTTATACATATTCCA 34129 || ||||| | ||| Sbjct 3499118 CTTGTACATCTGCCA 3499132 >seq31 Length=1678028 Score = 111 bits (122), Expect = 2e-19 Identities = 134/180 (74%), Gaps = 2/180 (1%) Strand=Plus/Plus Query 33306 ACACGTTTTTCGAAAAAATTAGTTTTTCCTTCCAATGATATATTTTCCATGAAATCAAAC 33365 || || ||||| |||||||| ||||||||||||| ||||| | |||||||||||||| Sbjct 618286 ACTCGCTTTTCAAAAAAATTTGTTTTTCCTTCCAGAGATATCATGTCCATGAAATCAAAA 618345 Query 33366 GGATTGGTAACATTGTAAAtttttttAAATCCCAA-TTCAGAAATCAATCTATCTGCGAC 33424 || || | || ||||| | ||| || |||||| | || || || || ||| || | Sbjct 618346 GGGTTTCTGACGTTGTATAATTTGTT-GTTCCCAAGTGCATTAAGCAGTCCATCCGCAAT 618404 Query 33425 GAATTCTATATATGTTTTCATCATTTCACAATTCATTCCTATGAGTTTAACTGGAAGAGC 33484 ||| || || ||| | ||||| ||| ||||||||||||| | | |||||||| ||| Sbjct 618405 GAACTCGATGTATATGCACATCAGCTCATAATTCATTCCTATCAAGTCAACTGGAATAGC 618464 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 629817355945680