Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lentinula_20edodes_20[genbank_20GCA_5F001562095.1_202016-02-16] 31 sequences; 46,106,741 total letters Query= NC_003389.1 Length=146454 Score E Sequences producing significant alignments: (Bits) Value seq23 147 2e-30 seq9 132 5e-26 seq31 104 2e-17 seq1 89.7 5e-13 >seq23 Length=3600692 Score = 147 bits (162), Expect = 2e-30 Identities = 249/358 (70%), Gaps = 11/358 (3%) Strand=Plus/Plus Query 11629 ACACGCAAAATCACAATGTAAACCTTCGTCTCTACTTATTAGTTCATTAGAAAATGTTAA 11688 |||||| ||||| |||||||||||| |||| || || || || || ||| | |||| Sbjct 3498578 ACACGCGAAATCGGTATGTAAACCTTCATCTCGGCTGATGAGCTCGTTTGAATAAGTTAG 3498637 Query 11689 TCCGGGCATCAATCCTCGtttttttATCCAAAATATAGCAGCAAATGAACCAGAAAAGAA 11748 || ||||||| || || || |||| ||| || || | ||| || || |||||||| || Sbjct 3498638 GCCAGGCATCAGGCCGCGCTTCTTTAACCAGAAAATGGAAGCGAACGACCCAGAAAAAAA 3498697 Query 11749 TATTCCCTCCACAGCTGCAAATGCTACTACTCTTTCTCCATA--TACCTTG-TTGCTAGA 11805 |||||||| ||||| || ||||| || | ||| ||| || | | | | | ||| ||| Sbjct 3498698 GATTCCCTCGACAGCAGCGAATGCCACCAATCTCTCTGCAAAAGTGCTTCGTTTGTCAGA 3498757 Query 11806 TATCCATTTTCTGGCCCAATCAGCTTTCTTTTTTACGCATTCCATTGTTTCTATAGCGTT 11865 ||||||||| |||||| || ||||| || | ||| ||||||||||| |||| Sbjct 3498758 TATCCATTTGAGGGCCCAGTCGGCTTTGCGCTTGATGCACGGTATTGTTTCTATTGCGTC 3498817 Query 11866 AAATAAAT----GCATTTTTTCTATATTATCTCTTACATATGTATCTATTAATAAACTAT 11921 || | || || || | || ||| | || |||||||| || | | | | Sbjct 3498818 GAAGAGATATGCGCGTTGAT----TAAGATCCTTGACGTATGTATCGATAAGCAGAGAGT 3498873 Query 11922 ACATTTCTGAATGAATATTTTCCATAGCTATTTGAAATCCATAGAAACATCGTGCCTC 11979 | |||| ||||||| |||||||| |||||| || ||||| || | || ||||| Sbjct 3498874 AAGTTTCAGAATGAACGTTTTCCATCATTATTTGGAACCCATAAAAGTAGCGCGCCTC 3498931 Score = 82.4 bits (90), Expect = 7e-11 Identities = 171/251 (68%), Gaps = 3/251 (1%) Strand=Plus/Plus Query 38295 TCCTATTCCACCTGCATGTTTTGAT-ATTAAAGCGCATTGTTTTAACGTATCAAATATAC 38353 |||||| ||||| || || |||| | || ||||| || | ||| | ||||| | |||| Sbjct 923205 TCCTATGCCACCGGC-TGATTTGCTGATCAAAGCACAGTTTTTCAGGGTATCGTAGATAC 923263 Query 38354 CTTCTATACTGTCATCCTTTATTGGTAGTATAAAACAACTAGACATTTGAGGC-AATGGA 38412 |||| ||| ||||| || || | | || || |||||||||||| || || Sbjct 923264 CTTCGATAGAATCATCTTTCATGCAAACAAGGAAGCATGAGGACATTTGAGGCGAAAGGG 923323 Query 38413 GTTCCGGCGTTAAATAATGTAGGAGATGCATGTATGAACCATTTTTCCGACAAATAATTA 38472 || ||||| || || | || |||| ||||| |||| || || |||| || Sbjct 923324 GTACCGGCATTGAAGAGAGTGGGAGTGGCATGAGTGAAATATCGCTCGGACATGAGGTTG 923383 Query 38473 TATGTTTCTATTACATCATCTATATCACCGCCGTGAATACCTAGAGATACCCTCATTAGC 38532 ||||||| | |||| || ||||| | ||||| || || | || |||| ||| | | Sbjct 923384 TATGTTTGCAAGACATGCTCGATATCGTCTCCGTGTATCCCAACAGCGACCCGCATGATC 923443 Query 38533 ATATGTTGTGG 38543 ||||||||||| Sbjct 923444 ATATGTTGTGG 923454 >seq9 Length=652519 Score = 132 bits (146), Expect = 5e-26 Identities = 247/357 (69%), Gaps = 8/357 (2%) Strand=Plus/Minus Query 11629 ACACGCAAAATCACAATGTAAACCTTCGTCTCTA-CTTATTAGTTCATTAGAAAATGTTA 11687 ||| ||||| ||| ||| | ||||| || | || || |||||||| || || || | Sbjct 464842 ACATGCAAATTCAGTATGCATTCCTTCATCGCCGGCTGATGAGTTCATTTGAGAACGTCA 464783 Query 11688 ATCCGGGCATCAATCCTCGtttttttATCCAAAATATAGCAG-CAAATGAACCAGAAAAG 11746 | || |||||||| ||||| || || ||||||||||| |||| |||| || ||||||| Sbjct 464782 AACCCGGCATCAACCCTCGCTTCTTCATCCAAAATAT-GCAGGCAAACGACGCAGAAAAA 464724 Query 11747 AATATTCCCTCCACAGCTGCAAATGCTACTACTCTTTCTCCATAT----ACCTTGTTGCT 11802 ||||| || || | |||||||||||||| | | ||| || || | || | || Sbjct 464723 AATATGCCTTCGATCGCTGCAAATGCTACCAAACGCTCTGCAAATGTGAATCTATTATCT 464664 Query 11803 AGATATCCATTTTCTGGCCCAATCAGCTTTCTTTTTTACGCATTCCATTGTTTCTATAGC 11862 || ||||||| ||||| | ||||| |||| | ||| || ||||| |||| Sbjct 464663 TGA-ATCCATTGAAGCGCCCATTTTGCTTTTCTTTTAATGCACGGAATAGTTTCAATAGA 464605 Query 11863 GTTAAATAAATGCATTTTTTCTATATTATCTCTTACATATGTATCTATTAATAAACTATA 11922 ||| ||||| | ||| | ||||| | ||| || | || | ||| || Sbjct 464604 GTTGAATAACATCGAACGCTCTGGAGCATCTCGAATATAGGTTTGAATAAGCAAAGAGTA 464545 Query 11923 CATTTCTGAATGAATATTTTCCATAGCTATTTGAAATCCATAGAAACATCGTGCCTC 11979 |||| ||||||||||||||||| || || || ||||||||||| |||||||| Sbjct 464544 GGTTTCAGAATGAATATTTTCCATCATAATCTGGAAACCATAGAAACACCGTGCCTC 464488 >seq31 Length=1678028 Score = 104 bits (114), Expect = 2e-17 Identities = 162/228 (71%), Gaps = 8/228 (4%) Strand=Plus/Plus Query 36790 TCAACTGTGAATTTTATAGGATTTGATGCCGATTTTGTTCTCATATAATACATTCCAGTT 36849 |||| ||| |||| ||||| | || || | |||||||| || ||| ||||||||||| Sbjct 580010 TCAATTGTAAATTGAATAGGTTCTGCGGCTGCTTTTGTTCGCAAATAGTACATTCCAGTC 580069 Query 36850 TTTAGCCCCAATCTCCATCCGTAAAAATGCATACTGGTCAGTT---TTG-CGTATGTAGG 36905 || | ||| ||||||| || || |||||||| |||| || ||| |||| || | Sbjct 580070 TTCAAGCCCTTCTTCCATCCATAGAAGTGCATACTTGTCAATTGACTTGTCGTAGGT--G 580127 Query 36906 ATTATCTATATATATTGTCATTGATTGACTTTGATCTATAAACGCACCTCTGTCGGCTGC 36965 || || |||||| || | |||||||||| ||||||| || | ||||||||| Sbjct 580128 ATGCAAAATGGATATTGACACT--TTGACTTTGACAAATAAACGGCCCACGGTCGGCTGC 580185 Query 36966 CATTTCTAAAATACATTTTTGAGATATCTCCCAAACCGTTTTATATAT 37013 | || | ||| ||| ||||| || |||||||| || |||| || Sbjct 580186 TAGATCGAGAATCGTTTTCTGAGAAATTTCCCAAACGGTCCTATAGAT 580233 Score = 98.7 bits (108), Expect = 9e-16 Identities = 227/335 (68%), Gaps = 9/335 (3%) Strand=Plus/Plus Query 11651 CCTTCGTCTCTACTTATTAGTTCATTAGAAAATGTTAATCCGGGCATCAATCCTCGtttt 11710 |||||||| | ||| || ||||| || ||||| || || || |||| ||||| |||||| Sbjct 618637 CCTTCGTCACGACTGATAAGTTCGTTTGAAAAGGTCAACCCAGGCAATAATCCACGTTTT 618696 Query 11711 tttATCCAAAATATAGCA-GCAAATGAACCAGAAAAGAATATTCCCTCCACAGCTGCAAA 11769 || ||||||||||| ||| || || || || || || || ||||| || | |||| || Sbjct 618697 TTGATCCAAAATAT-GCACGCGAAAGATCCGGAGAAAAAAATTCCTTCGATGGCTGAGAA 618755 Query 11770 TGCTACTACTCTTTCTCCATA--TACCTTG-TTGCTAGATATCCATTTTCTGGCCCAATC 11826 ||| || | || ||| || | || |||| | | |||||| || ||||| | Sbjct 618756 TGCAACGAGTCGTTCCGCAAAAGTAACTTGATCGTCTTCGATCCATCTTAGTGCCCATGC 618815 Query 11827 AGCTTTCTTTTTTACGCATTCCATTGTTTCTATAGCGTTAAATA--AATGCATTTTTTCT 11884 ||||| | ||| | ||| || ||||| |||| | || | |||| | ||| Sbjct 618816 CGCTTTTTGTTTAATGCAAGGAATCGTTTCGATAGAACTGAACAAGAATG--ATCGTTCG 618873 Query 11885 ATATTATCTCTTACATATGTATCTATTAATAAACTATACATTTCTGAATGAATATTTTCC 11944 | |||| | ||| || | || | ||| ||| |||||||||| || |||||| Sbjct 618874 AATGGATCTTGGATATACGTTTGAATCAGCAAAGAATAAGTTTCTGAATGGATGTTTTCC 618933 Query 11945 ATAGCTATTTGAAATCCATAGAAACATCGTGCCTC 11979 || | || ||||||||||| |||| ||||| Sbjct 618934 ATCATTGACTGGAATCCATAGAAGGATCGAGCCTC 618968 >seq1 Length=5311644 Score = 89.7 bits (98), Expect = 5e-13 Identities = 210/313 (67%), Gaps = 3/313 (1%) Strand=Plus/Minus Query 38295 TCCTATTCCACCTGCATGTTTTGATATTAAAG-CGCATTGTTTTAACGTATCAAATATAC 38353 |||||| ||||| || || ||| || | ||| |||| ||| ||||| |||||||| | Sbjct 5026007 TCCTATACCACCAGC-TGCTTTACTAATCAAGGCGCAAGTTTTCAACGTCTCAAATATTC 5025949 Query 38354 CTTCTATACTGTCATCCTTTATTGGTAGTATAAAACAACTAGACATTTGAGGCAATGGAG 38413 |||| ||| || || || | | | |||||| ||||||||||| | | || Sbjct 5025948 CTTCAATAGAATC-TCTTTCGTGCAGACCAAAAAACATGACGACATTTGAGGTGAAGAAG 5025890 Query 38414 TTCCGGCGTTAAATAATGTAGGAGATGCATGTATGAACCATTTTTCCGACAAATAATTAT 38473 | || || |||| | || |||| |||||| |||| || ||||||| | || | Sbjct 5025889 TACCTGCACTAAAAAGGGTTGGAGTTGCATGAGTGAAATATCGCTCCGACATAAGGTTGT 5025830 Query 38474 ATGTTTCTATTACATCATCTATATCACCGCCGTGAATACCTAGAGATACCCTCATTAGCA 38533 | || | | |||| ||| |||||| | || || || || | || || | |||||||| Sbjct 5025829 ACGTCTGCAACACATGATCAATATCATCTCCATGTATTCCGACAGCAACACGCATTAGCA 5025770 Query 38534 TATGTTGTGGTCTTTCTATTATTTTATTATTCTGTTTAAGTAGATACGATTTTTCTAATG 38593 ||||||| |||| || | || ||| | |||| ||||| ||| ||| || | Sbjct 5025769 TATGTTGCGGTCGCTCAACAATACGTCCGTTCAATCTAAGCAGATAAGATCGTTCCAACG 5025710 Query 38594 TTTTTATTCCAAA 38606 |||| | ||||| Sbjct 5025709 TTTTGAAACCAAA 5025697 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 468524618446640