Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lentinula_20edodes_20[genbank_20GCA_5F001562095.1_202016-02-16] 31 sequences; 46,106,741 total letters Query= NC_003391.1 Length=205719 Score E Sequences producing significant alignments: (Bits) Value seq31 120 4e-22 >seq31 Length=1678028 Score = 120 bits (132), Expect = 4e-22 Identities = 378/572 (66%), Gaps = 24/572 (4%) Strand=Plus/Plus Query 36158 CATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGT 36217 ||||| || ||| ||| | || ||||| | ||| || | |||||| ||||| || | Sbjct 618616 CATGCAAAGTCGGTGTGCATTCCTTCGTCACGACTGATAAGTTCGTTTGAAAAGGTCAAC 618675 Query 36218 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAA 36277 || |||| || ||||| ||||| | |||||||||| |||| || ||||| || || ||| Sbjct 618676 CCAGGCAATAATCCACGTTTTTTGATCCAAAATATGCACGCGAAAGATCCGGAGAAAAAA 618735 Query 36278 ATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCA----TAACCGGCACTGTCATG 36333 |||||||| | || | || |||| |||| || || |||| | | ||| | Sbjct 618736 ATTCCTTCGATGGCTGAGAATGCAACGAGTCGTTCCGCAAAAGTAACTTG-ATCGTCTTC 618794 Query 36334 TATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTATAGCA-T 36392 ||||| || | ||||| | || || | ||| | ||||| || || || |||| | | Sbjct 618795 GATCCATCTTAGTGCCCATGCCGCTTTTTGTTTAATGCAAGGAATCGTTTCGATAGAACT 618854 Query 36393 TAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCAATCA--AAAGACTATA 36450 || ||| | | || | | ||||| | ||| || | ||||| ||||| ||| Sbjct 618855 GAACAAGAATGATCGTTCGAAT-GGATCTTGGATATACGTTTGAATCAGCAAAGA--ATA 618911 Query 36451 CATTTCCGAATGAATGTTTTCAATGGCCATT---TGAAATCCGTAGAAACATCTAGCCTC 36507 |||| ||||| |||||||| || |||| || ||||| ||||| ||| |||||| Sbjct 618912 AGTTTCTGAATGGATGTTTTCCAT---CATTGACTGGAATCCATAGAAGGATCGAGCCTC 618968 Query 36508 GGTAATCTGTACTTCTGTACAAAATCGTTCTGCT-AAATTTTCATTCACTATTCCGTCAC 36566 | | ||| | ||| || | || | | | | || ||||| || || || ||||| Sbjct 618969 AGCGACCTGAATTTCACTAGAGAAGTG-ACGGATCAAGTTTTCGTTTACAATACCGTCGG 619027 Query 36567 TGGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTTTG-GT--GTTAGTT 36623 || || ||||| || | ||| | | ||| | ||||||| || | | | Sbjct 619028 ACGCAGCGAAAAATGCTAGCACACGAGCCGTGAAAAAGCGCTCGTTTGCGTTCATGCGGT 619087 Query 36624 TATTCCAATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCT 36683 | ||||| || | | ||| || || | || | ||||||| ||||| || || |||| Sbjct 619088 TGTTCCAGTCGTGCAAATCGTTTGAAAGGTCTATTTCTTCCGTAGTCCAGAAGGAAGCCT 619147 Query 36684 CTGCCTTTTTATACATATTCCAGA--TGTCAT 36713 | || ||||| ||| | ||||| |||||| Sbjct 619148 CAGCTTTTTTGTACCTTCGCCAGATCTGTCAT 619179 Score = 87.8 bits (96), Expect = 2e-12 Identities = 129/180 (72%), Gaps = 2/180 (1%) Strand=Plus/Plus Query 35882 ACACGTTTTTCGAAAAAATTAGTTTTACCTTCTAATGATATATTTTCCATGAAATCGAAT 35941 || || ||||| |||||||| ||||| ||||| | ||||| | ||||||||||| || Sbjct 618286 ACTCGCTTTTCAAAAAAATTTGTTTTTCCTTCCAGAGATATCATGTCCATGAAATCAAAA 618345 Query 35942 GGATTGATAACATTATAAAtttttttAAATCCCAA-TTCAGAAATCAATCTATCTGCGAC 36000 || || | || || || | ||| || |||||| | || || || || ||| || | Sbjct 618346 GGGTTTCTGACGTTGTATAATTTGTT-GTTCCCAAGTGCATTAAGCAGTCCATCCGCAAT 618404 Query 36001 AAATTCTATATATGTTTTCATCATTTCACAATTCATTCCTATAAGTTTAACTGGAAGAGC 36060 || || || ||| | ||||| ||| ||||||||||||| | | |||||||| ||| Sbjct 618405 GAACTCGATGTATATGCACATCAGCTCATAATTCATTCCTATCAAGTCAACTGGAATAGC 618464 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 658172544958040