Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lentinula_20edodes_20[genbank_20GCA_5F001562095.1_202016-02-16] 31 sequences; 46,106,741 total letters Query= NC_004002.1 Length=149955 Score E Sequences producing significant alignments: (Bits) Value seq23 156 4e-33 seq31 118 1e-21 >seq23 Length=3600692 Score = 156 bits (172), Expect = 4e-33 Identities = 319/468 (68%), Gaps = 6/468 (1%) Strand=Plus/Plus Query 13871 ACACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAA 13930 |||||| ||||| ||| | || ||||||| || || || ||||||||| | |||| Sbjct 3498578 ACACGCGAAATCGGTATGTAAACCTTCATCTCGGCTGATGAGCTCGTTTGAATAAGTTAG 3498637 Query 13931 TCCTGGCATCAATCCTCGtttttttAACCAAAATATTGCAGCAAATGACCCGGAAAAGAA 13990 || ||||||| || || || |||||||| || || | ||| || ||||| ||||| || Sbjct 3498638 GCCAGGCATCAGGCCGCGCTTCTTTAACCAGAAAATGGAAGCGAACGACCCAGAAAAAAA 3498697 Query 13991 TATTCCCTCAACTGCAGCAAACGCTATTAATCGTTCTCCAAACGATGCTTT-TTTGTTCG 14049 |||||||| || ||||| || || | |||| ||| |||| | ||||| ||||| | Sbjct 3498698 GATTCCCTCGACAGCAGCGAATGCCACCAATCTCTCTGCAAAAG-TGCTTCGTTTGTCAG 3498756 Query 14050 ATATCCATTTTCTAGCCCATTCAGAtttttttttAATAAAATCCATTGTTTCAATAGCAT 14109 |||||||||| ||||| || | ||| || || | |||||||| || || | Sbjct 3498757 ATATCCATTTGAGGGCCCAGTCGGCTTTGCGCTTGATGCACGGTATTGTTTCTATTGCGT 3498816 Query 14110 TAAATAAATATTC-CTTCTCTTTAG-TACTTGAAATGTATGTATCAATAAGTAAGCTATA 14167 || | |||| | | | || || | |||| | ||||||||| ||||| | || Sbjct 3498817 CGAAGAGATATGCGCGTTGATTAAGATCCTTG--ACGTATGTATCGATAAGCAGAGAGTA 3498874 Query 14168 CATTTCAGAGTGTATGTTTTCCATAGCTATCTGAAAACCATAAAAGCATCTAGCTTCCGA 14227 ||||||| || | ||||||||| ||| || || ||||||||| | | || || | Sbjct 3498875 AGTTTCAGAATGAACGTTTTCCATCATTATTTGGAACCCATAAAAGTAGCGCGCCTCAGC 3498934 Query 14228 CCATTGTACTTCCGAGTAAAATCTTTCGGCCAAATTTTCATTAACTATACCATCACTAGC 14287 ||| ||||| |||| | || || |||||| || || ||||| ||| || Sbjct 3498935 TGCTTGCACTTCGTTTGAAAAGCGCTCCAACAGATTTTCGTTCACGATACCGTCAGAGGC 3498994 Query 14288 TGCAAAAAATGCCAATATGTTTTTAATAAAGTATTGCTCTTCATTGTT 14335 ||||| ||||| | | || | || || | |||| |||||||| Sbjct 3498995 GGCAAAGAATGCAAGGACGTGGGTGATGAAATGACGCTCGTCATTGTT 3499042 >seq31 Length=1678028 Score = 118 bits (130), Expect = 1e-21 Identities = 363/545 (67%), Gaps = 21/545 (4%) Strand=Plus/Plus Query 13893 CCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCTGGCATCAATCCTCGtttt 13952 || || || | ||| ||||||||||||||||| || || || |||| ||||| |||||| Sbjct 618637 CCTTCGTCACGACTGATAAGTTCGTTTGAAAAGGTCAACCCAGGCAATAATCCACGTTTT 618696 Query 13953 tttAACCAAAATATTGCA-GCAAATGACCCGGAAAAGAATATTCCCTCAACTGCAGCAAA 14011 || | |||||||| |||| || || || ||||| || || ||||| || | || | || Sbjct 618697 TTGATCCAAAATA-TGCACGCGAAAGATCCGGAGAAAAAAATTCCTTCGATGGCTGAGAA 618755 Query 14012 CGCTATTAATCGTTCTCCAAACGATGCTT--TTTTGTTCGATATCCATTTTCTAGCCCAT 14069 || | | |||||| |||| | ||| | | |||| |||||| || |||||| Sbjct 618756 TGCAACGAGTCGTTCCGCAAAAGTAACTTGATCGTCTTCG--ATCCATCTTAGTGCCCAT 618813 Query 14070 TCAGAtttttttttAATAAAATCCATTGTTTCAATAGCATTAAATA--AATATTCCTTCT 14127 | | ||||| |||||| || || ||||| |||| | | || | ||| || ||| Sbjct 618814 GCCGCTTTTTGTTTAATGCAAGGAATCGTTTCGATAGAACTGAACAAGAATGATCGTTC- 618872 Query 14128 CTTTAGTACTTGAAATGTATGTATCAATAAGTAAGCTATACATTTCAGAGTGTATGTTTT 14187 | | |||| || || || | ||| || || ||| |||| || || ||||||| Sbjct 618873 GAATGGATCTTG-GATATACGTTTGAATCAGCAAAGAATAAGTTTCTGAATGGATGTTTT 618931 Query 14188 CCATAGCTATCTGAAAACCATAAAAGCATCTAGCTTC--CGACCATTGTACTTC-CGAGT 14244 |||| | ||| || ||||| ||| ||| ||| || ||||| || | ||| | || Sbjct 618932 CCATCATTGACTGGAATCCATAGAAGGATCGAGCCTCAGCGACC--TGAATTTCACTAG- 618988 Query 14245 AAAATCTTTCGG-CCAAATTTTCATTAACTATACCATCACTAGCTGCAAAAAATGCCA-- 14301 | | | ||| ||| ||||| || || ||||| || || || |||||||| | Sbjct 618989 -AGAAGTGACGGATCAAGTTTTCGTTTACAATACCGTCGGACGCAGCGAAAAATGCTAGC 619047 Query 14302 ATATG-TTTTTAATAAAGTATTGCTCTTCATTGTTGAGTTTTTTCCAATCGGATAAATCC 14360 | | | | | |||| | | | | || || | || ||||| ||| ||||| Sbjct 619048 ACACGAGCCGTGAAAAAGCGCTCGTTTGCGTTCATGCGGTTGTTCCAGTCGTGCAAATCG 619107 Query 14361 TTAGAAAGATCTACTTCATCAACTGTCCAAAAACTAGCGACAGCTTTTTTATACATTACC 14420 || ||||| |||| ||| || ||||| || ||| |||||||||| ||| || | Sbjct 619108 TTTGAAAGGTCTATTTCTTCCGTAGTCCAGAAGGAAGCCTCAGCTTTTTTGTACCTTCGC 619167 Query 14421 CATAT 14425 || || Sbjct 619168 CAGAT 619172 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 479727814105400