Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lentinula_20edodes_20[genbank_20GCA_5F001562095.1_202016-02-16] 31 sequences; 46,106,741 total letters Query= NC_004003.1 Length=149599 Score E Sequences producing significant alignments: (Bits) Value seq23 141 9e-29 seq31 129 6e-25 >seq23 Length=3600692 Score = 141 bits (156), Expect = 9e-29 Identities = 374/563 (66%), Gaps = 10/563 (2%) Strand=Plus/Plus Query 13566 AGTTAAAAATTCTTTTTCTATAGACACAGCCTCGTTTATAATAATCTTAATAATGTCA-- 13623 ||| ||||| |||| ||| |||| || || || ||||||| |||| || || | Sbjct 3498485 AGTCAAAAAATCTTGTTCGATAGCAACCGCTTCCGTTATAATTTTCTTGATGATACCCGG 3498544 Query 13624 TTAGAAGGAGGATATTTTAGATGTTTAAAAATTAAACACGCAAAATCACAATGAAGGCCC 13683 || | || | |||||||| | || | |||||| ||||| ||| | || Sbjct 3498545 TTGGGCGGGGCGC--TTTAGATGGGTGGTAAGGAGACACGCGAAATCGGTATGTAAACCT 3498602 Query 13684 TCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCTGGCATCAATCCTCGttttttt 13743 ||||||| || || || ||||||||| | |||| || ||||||| || || || ||| Sbjct 3498603 TCATCTCGGCTGATGAGCTCGTTTGAATAAGTTAGGCCAGGCATCAGGCCGCGCTTCTTT 3498662 Query 13744 AACCAAAATATTGCAGCGAATGATCCGGAAAAGAATATTCCCTCAACTGCAGCAAACGCT 13803 ||||| || || | |||||| || || ||||| || |||||||| || ||||| || || Sbjct 3498663 AACCAGAAAATGGAAGCGAACGACCCAGAAAAAAAGATTCCCTCGACAGCAGCGAATGCC 3498722 Query 13804 ATTAGTCGTTCTCCAAACGATGCTTT-TTTGTTTGATATCCATTTTCTAGCCCATTCAGA 13862 | | || ||| |||| | ||||| ||||| ||||||||||| ||||| || | Sbjct 3498723 ACCAATCTCTCTGCAAAAG-TGCTTCGTTTGTCAGATATCCATTTGAGGGCCCAGTCGGC 3498781 Query 13863 tttttttttAATAAAATCCATTGTTTCGATTGCATTGAATAAATGTTC-CTTCTCTTTAG 13921 ||| || || | |||||||| ||||| | ||| | || | | | | || || Sbjct 3498782 TTTGCGCTTGATGCACGGTATTGTTTCTATTGCGTCGAAGAGATATGCGCGTTGATTAAG 3498841 Query 13922 -TACTTGAAATGTATGTATCAATAAGTAAGCTATACATTTCAGAGTGTATGTTTTCTATA 13980 | |||| | ||||||||| ||||| | || ||||||| || | |||||| || Sbjct 3498842 ATCCTTG--ACGTATGTATCGATAAGCAGAGAGTAAGTTTCAGAATGAACGTTTTCCATC 3498899 Query 13981 GCTATCTGAAAACCATAAAAACATCTAGCTTCTGACCATTGTACCTCCGAGTAAAATCTT 14040 ||| || || |||||||| | | || || | ||| || || |||| | Sbjct 3498900 ATTATTTGGAACCCATAAAAGTAGCGCGCCTCAGCTGCTTGCACTTCGTTTGAAAAGCGC 3498959 Query 14041 TCTGCCAAGTTTTCATTAACAATACCATCACTAGCTGCAAAAAATGCCAATATGTTTTTA 14100 || || ||||| || || ||||| ||| || ||||| ||||| | | || | Sbjct 3498960 TCCAACAGATTTTCGTTCACGATACCGTCAGAGGCGGCAAAGAATGCAAGGACGTGGGTG 3499019 Query 14101 ATAAAGTATTGCTCTTCATTGTT 14123 || || | |||| |||||||| Sbjct 3499020 ATGAAATGACGCTCGTCATTGTT 3499042 >seq31 Length=1678028 Score = 129 bits (142), Expect = 6e-25 Identities = 363/543 (67%), Gaps = 17/543 (3%) Strand=Plus/Plus Query 13681 CCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCTGGCATCAATCCTCGtttt 13740 || || || | ||| ||||||||||||||||| || || || |||| ||||| |||||| Sbjct 618637 CCTTCGTCACGACTGATAAGTTCGTTTGAAAAGGTCAACCCAGGCAATAATCCACGTTTT 618696 Query 13741 tttAACCAAAATATTGCA-GCGAATGATCCGGAAAAGAATATTCCCTCAACTGCAGCAAA 13799 || | |||||||| |||| ||||| |||||||| || || ||||| || | || | || Sbjct 618697 TTGATCCAAAATA-TGCACGCGAAAGATCCGGAGAAAAAAATTCCTTCGATGGCTGAGAA 618755 Query 13800 CGCTATTAGTCGTTCTCCAAACGATGCTTTTTTGTTTGATATCCATTTTCTAGCCCATTC 13859 || | |||||||| |||| | ||| | || | |||||| || |||||| | Sbjct 618756 TGCAACGAGTCGTTCCGCAAAAGTAACTTGATCGTCTTCGATCCATCTTAGTGCCCATGC 618815 Query 13860 AGAtttttttttAATAAAATCCATTGTTTCGATTGCATTGAATA--AATGTTCCTTCTCT 13917 | ||||| |||||| || || |||||||| | | |||| | |||| || ||| Sbjct 618816 CGCTTTTTGTTTAATGCAAGGAATCGTTTCGATAGAACTGAACAAGAATGATCGTTC-GA 618874 Query 13918 TTAGTACTTGAAATGTATGTATCAATAAGTAAGCTATACATTTCAGAGTGTATGTTTTCT 13977 | | |||| || || || | ||| || || ||| |||| || || |||||||| Sbjct 618875 ATGGATCTTG-GATATACGTTTGAATCAGCAAAGAATAAGTTTCTGAATGGATGTTTTCC 618933 Query 13978 ATAGCTATCTGAAAACCATAAAAACATCTAGCTTC--TGACCATTGTACCTC-CGAGTAA 14034 || | ||| || ||||| || ||| ||| || |||| || | || | || | Sbjct 618934 ATCATTGACTGGAATCCATAGAAGGATCGAGCCTCAGCGACC--TGAATTTCACTAG--A 618989 Query 14035 AATCTTTCTG-CCAAGTTTTCATTAACAATACCATCACTAGCTGCAAAAAATGCCA--AT 14091 | | | | ||||||||| || |||||||| || || || |||||||| | | Sbjct 618990 GAAGTGACGGATCAAGTTTTCGTTTACAATACCGTCGGACGCAGCGAAAAATGCTAGCAC 619049 Query 14092 ATG-TTTTTAATAAAGTATTGCTCTTCATTGTTGAGTTTTTTCCAATCGGCTAAATCCTT 14150 | | | | |||| | | | | || || | || ||||| ||| ||||| || Sbjct 619050 ACGAGCCGTGAAAAAGCGCTCGTTTGCGTTCATGCGGTTGTTCCAGTCGTGCAAATCGTT 619109 Query 14151 AGAAAGATCTACTTCATCAACTGTCCAAAAACTAGCGACAGCTTTTTTATACATTACCCA 14210 ||||| |||| ||| || ||||| || ||| |||||||||| ||| || ||| Sbjct 619110 TGAAAGGTCTATTTCTTCCGTAGTCCAGAAGGAAGCCTCAGCTTTTTTGTACCTTCGCCA 619169 Query 14211 TAT 14213 || Sbjct 619170 GAT 619172 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 478588614546840