Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lentinula_20edodes_20[genbank_20GCA_5F001562095.1_202016-02-16] 31 sequences; 46,106,741 total letters Query= NC_004105.1 Length=209771 Score E Sequences producing significant alignments: (Bits) Value seq29 185 1e-41 seq23 168 9e-37 seq31 105 9e-18 seq1 87.8 2e-12 >seq29 Length=5849119 Score = 185 bits (204), Expect = 1e-41 Identities = 386/571 (68%), Gaps = 17/571 (3%) Strand=Plus/Minus Query 42065 CATGCGAAATCGCAGTGCAGACCCTCATCTCTACTAATTAATTCGTTGGAAAACGTGAGT 42124 || ||||| ||| |||| ||||||||| | ||| || | ||||| || |||| | Sbjct 5169112 CAGGCGAAGTCGGTATGCATACCCTCATCACGACTGATGAGCTCGTTTGAGAACGCCAAG 5169053 Query 42125 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATAGACGCAAATGATCCAGAAAAGAAG 42184 || ||||||| |||||||| || | |||||| || ||||| || || ||||| ||||| Sbjct 5169052 CCAGGCATTAATCCACGCTTCTTCATCCAAAAGATGGACGCGAAGGAGCCAGAGAAGAAA 5168993 Query 42185 ATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCC-ATAACCGGCACT--GTCATGT 42241 || ||||| || || |||||||| | || | ||| || | ||||| | |||| Sbjct 5168992 ATGCCTTCAACAGCAGCAAAGGCTACGAGACGCTCGCCGAAAACCGAGTGTTCGTCACTG 5168933 Query 42242 ATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTA 42301 ||||| | ||||||| |||||||| || | ||||| || || || || |||| | Sbjct 5168932 ATCCAGTGCAGAGCCCACTCGGCCTTGCGCTTGATGCAAGGAATAGTCTCGATAGCATCA 5168873 Query 42302 AAGAGATAGtttttttCATTACTATCTTTAACATATGTATCGATCAAAAGACTATACATT 42361 || || | | ||| | ||||| | ||||| ||||| | |||| || | Sbjct 5168872 AAAAGGAAATCACGTTCGACAGGGTCTTTGATGTATGTGTCGATGAGAAGAGAGTAAGTC 5168813 Query 42362 TCTGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTGGCCTCGGTAACC 42421 || || |||||||| || || ||||| || |||||||| || | ||||| | ||| Sbjct 5168812 TCGGAGTGAATGTTCTCCATCATAATCTGGAACCCGTAGAAGCAACGTGCCTCAGCGACC 5168753 Query 42422 TGTACTTCTGTACAAAATCGTTCAGCTAAATTTTCGTTCACTATTCCGTCACTGGCTGCA 42481 |||||||| | | || ||||| | ||| ||||| || || || ||| ||| ||| Sbjct 5168752 TGTACTTCGTTCGAGAAGCGTTCGAGAAGATTCTCGTTGACAATGCCATCAGAGGCGGCA 5168693 Query 42482 AAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCCGGTGTTAAT-------TTATT 42534 || ||||| | ||| | || || | |||| || ||| | | || || Sbjct 5168692 AAGAACGCGAGGACACGGGAGATGAAGAA----TCGTTCGCTGTCATTCAGGCGGTTGTT 5168637 Query 42535 CCAATCATTGATATCTTTAGATATATCTACTTCTTCTACCGTCCAAAATGATGCTTCTGC 42594 ||| |||| | ||||| |||| ||| | ||||| | ||||| || || || || || Sbjct 5168636 CCAGTCATGAAGGTCTTTTGATAAATCCATCTCTTCCGCAGTCCAGAAAGAGGCCTCGGC 5168577 Query 42595 CTTTTTATACATATTCCAGATATCATGATAT 42625 ||| || ||||| | || ||||| |||||| Sbjct 5168576 CTTCTTGTACATTTGCC--ATATC-TGATAT 5168549 >seq23 Length=3600692 Score = 168 bits (186), Expect = 9e-37 Identities = 371/555 (67%), Gaps = 6/555 (1%) Strand=Plus/Plus Query 42064 ACATGCGAAATCGCAGTGCAGACCCTCATCTCTACTAATTAATTCGTTGGAAAACGTGAG 42123 ||| ||||||||| || | ||| ||||||| || || | ||||| ||| | || || Sbjct 3498578 ACACGCGAAATCGGTATGTAAACCTTCATCTCGGCTGATGAGCTCGTTTGAATAAGTTAG 3498637 Query 42124 TCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATAGACGCAAATGATCCAGAAAAGAA 42183 || ||||| ||||| ||||| || | ||| || || || || || || |||||||| || Sbjct 3498638 GCCAGGCATCAGGCCGCGCTTCTTTAACCAGAAAATGGAAGCGAACGACCCAGAAAAAAA 3498697 Query 42184 GATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAACCGGCAC---TGTCATG 42240 |||||| || || || || || || | | ||||||| || || | | ||||| Sbjct 3498698 GATTCCCTCGACAGCAGCGAATGCCACCAATCTCTCTGCAAAAGTGCTTCGTTTGTCAGA 3498757 Query 42241 TATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATT 42300 |||||| || | ||||| ||||| || || | || || || |||||||| || | Sbjct 3498758 TATCCATTTGAGGGCCCAGTCGGCTTTGCGCTTGATGCACGGTATTGTTTCTATTGCGTC 3498817 Query 42301 AAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCGATCAAAAGACTATACAT 42360 |||||||| || |||| ||| || || ||||||||||| | ||| || | Sbjct 3498818 GAAGAGATATGCGCGTTGATTAAGATCCTTGACGTATGTATCGATAAGCAGAGAGTAAGT 3498877 Query 42361 TTCTGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTGGCCTCGGTAAC 42420 ||| ||||||| |||||| || || || || || || || | | ||||| | | Sbjct 3498878 TTCAGAATGAACGTTTTCCATCATTATTTGGAACCCATAAAAGTAGCGCGCCTCAGCTGC 3498937 Query 42421 CTGTACTTCTGTACAAAATCGTTCAGCTAAATTTTCGTTCACTATTCCGTCACTGGCTGC 42480 || ||||| | |||| || || | |||||||||||| || |||||| ||| || Sbjct 3498938 TTGCACTTCGTTTGAAAAGCGCTCCAACAGATTTTCGTTCACGATACCGTCAGAGGCGGC 3498997 Query 42481 AAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCCGGTGTTAAT---TTATTCCA 42537 ||| || || | || || | || |||| ||||| ||||| | ||||| Sbjct 3498998 AAAGAATGCAAGGACGTGGGTGATGAAATGACGCTCGTCATTGTTTAATCGCTCGTTCCA 3499057 Query 42538 ATCATTGATATCTTTAGATATATCTACTTCTTCTACCGTCCAAAATGATGCTTCTGCCTT 42597 || | ||| | || | || | ||||| ||||| || ||||||||||| || Sbjct 3499058 GTCGACAAGATCATGAGTGAGGTCAATCTCTTCCGAGGTCCAGAACGATGCTTCTGCTTT 3499117 Query 42598 TTTATACATATTCCA 42612 || ||||| | ||| Sbjct 3499118 CTTGTACATCTGCCA 3499132 >seq31 Length=1678028 Score = 105 bits (116), Expect = 9e-18 Identities = 133/180 (74%), Gaps = 2/180 (1%) Strand=Plus/Plus Query 41789 ACACGTTTTTCGAAAAAATTAGTCTTTCCTTCCAATGATATATTTTCCATGAAATCAAAC 41848 || || ||||| |||||||| || |||||||||| ||||| | |||||||||||||| Sbjct 618286 ACTCGCTTTTCAAAAAAATTTGTTTTTCCTTCCAGAGATATCATGTCCATGAAATCAAAA 618345 Query 41849 GGATTGGTAACATTATAAAtttttttAAATCCCAA-TTCAGAAATCAATCTATCTGCGAT 41907 || || | || || || | ||| || |||||| | || || || || ||| || || Sbjct 618346 GGGTTTCTGACGTTGTATAATTTGTT-GTTCCCAAGTGCATTAAGCAGTCCATCCGCAAT 618404 Query 41908 GAATTCTATATATGTTTTCATCATTTCACAATTCATTCCTATAAGTTTAACTGGAAGAGC 41967 ||| || || ||| | ||||| ||| ||||||||||||| | | |||||||| ||| Sbjct 618405 GAACTCGATGTATATGCACATCAGCTCATAATTCATTCCTATCAAGTCAACTGGAATAGC 618464 >seq1 Length=5311644 Score = 87.8 bits (96), Expect = 2e-12 Identities = 132/185 (71%), Gaps = 6/185 (3%) Strand=Plus/Minus Query 70837 AGATAGTACATGCCTGTTTTTAGACCGAGACTCCATCCGTAAAAATGCATACTCGTTAGT 70896 ||||| ||||| || ||||| | || |||||||| |||||||||||||| ||||| Sbjct 5027693 AGATAATACATCCCGGTTTTCAAGCCCTTTCTCCATCCATAAAAATGCATACTTGTTAGC 5027634 Query 70897 TTGGA---ATAGCTAGGATCGGCTATGTGAATATTCATCGACTGACTTTGATCGATGAAG 70953 | || | || | ||| ||| | |||||||||| ||||||||| ||| || Sbjct 5027633 T--GACCCACAGAT-GGAGAGGCAAGATGAATATTCAAGCTCTGACTTTGGCAGATAAAC 5027577 Query 70954 GCTCCCCTGTCTGCAGCCATTTTTATGATCGTCTTTTGTGGAATTTCCCAAATAGTTTTA 71013 || || | || | || | | | ||||| ||||| ||||||||||||| |||||| Sbjct 5027576 GCGCCACGATCCACGGCAAAATCCAAAATCGTTTTTTGAGGAATTTCCCAAACCGTTTTA 5027517 Query 71014 TAAAC 71018 ||||| Sbjct 5027516 TAAAC 5027512 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 671138939933560