Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Lentinula_20edodes_20[genbank_20GCA_5F001562095.1_202016-02-16]
31 sequences; 46,106,741 total letters
Query= NC_005179.1
Length=134721
Score E
Sequences producing significant alignments: (Bits) Value
seq9 149 5e-31
seq23 141 8e-29
seq31 116 3e-21
>seq9
Length=652519
Score = 149 bits (164), Expect = 5e-31
Identities = 272/388 (70%), Gaps = 19/388 (5%)
Strand=Plus/Minus
Query 13150 ACATGCAAAATCACAGTGCAATCCTTCATCTCTA-CTTATTAGCTCGTTTGAAAATGTTA 13208
||||||||| ||| |||| ||||||||| | || || || || ||||| || || |
Sbjct 464842 ACATGCAAATTCAGTATGCATTCCTTCATCGCCGGCTGATGAGTTCATTTGAGAACGTCA 464783
Query 13209 GACCCGGCATAAGCCCTCGTTTTTTAATCCAAAATATAGCA-GCAAACGAACCCGaaaaa 13267
||||||||| | |||||| || || ||||||||||| ||| |||||||| | ||||||
Sbjct 464782 AACCCGGCATCAACCCTCGCTTCTTCATCCAAAATAT-GCAGGCAAACGACGCAGAAAAA 464724
Query 13268 aaTATTCCTTCAACTGCTGCAAACGCTATCAACCTTTCACCATACGT-ACTATTTTTACT 13326
||||| ||||| | |||||||| |||| ||| | || || | || | | | || ||
Sbjct 464723 AATATGCCTTCGATCGCTGCAAATGCTACCAAACGCTCTGCAAATGTGAATCTATTATCT 464664
Query 13327 CTCTATCCACTTTCTGGCCCAGTTTGCTTTTTGTTTAACGCAGTTCATATTTTCTATTGC 13386
| ||||| | ||||| ||||||||| ||||| ||| ||| |||| || |
Sbjct 464663 -TGAATCCATTGAAGCGCCCATTTTGCTTTTCTTTTAATGCACGGAATAGTTTCAATAGA 464605
Query 13387 GTTAAATAA-AT--AAtttttttCCTTACTGTCTAAAATATAAGTATCTATCAATAAGCT 13443
||| ||||| || || || | ||| |||||| | | | |||||||
Sbjct 464604 GTTGAATAACATCGAA---CGCTCTGGAGCATCTCGAATATAGG----TTTGAATAAGCA 464552
Query 13444 A----TACATTTCTGAATGAATATTTTCCATCGCTATTTGGAAACCATAAAAACATCTAG 13499
| || |||| |||||||||||||||||| || ||||||||||| ||||| | |
Sbjct 464551 AAGAGTAGGTTTCAGAATGAATATTTTCCATCATAATCTGGAAACCATAGAAACACCGTG 464492
Query 13500 CCTCTGATACCTGAACTTCGGAGTAAAA 13527
|||| | ||||| | |||| | ||||
Sbjct 464491 CCTCCGGCACCTGTATTTCGTTGGAAAA 464464
>seq23
Length=3600692
Score = 141 bits (156), Expect = 8e-29
Identities = 297/442 (67%), Gaps = 8/442 (2%)
Strand=Plus/Plus
Query 13150 ACATGCAAAATCACAGTGCAATCCTTCATCTCTACTTATTAGCTCGTTTGAAAATGTTAG 13209
||| || ||||| || || |||||||||| || || |||||||||||| | |||||
Sbjct 3498578 ACACGCGAAATCGGTATGTAAACCTTCATCTCGGCTGATGAGCTCGTTTGAATAAGTTAG 3498637
Query 13210 ACCCGGCATAAGCCCTCGTTTTTTAATCCAAAATATAGCAGCAAACGAACCCGaaaaaaa 13269
|| ||||| || || || || || | ||| || || | ||| ||||| || ||||||||
Sbjct 3498638 GCCAGGCATCAGGCCGCGCTTCTTTAACCAGAAAATGGAAGCGAACGACCCAGAAAAAAA 3498697
Query 13270 TATTCCTTCAACTGCTGCAAACGCTATCAACCTTTCACCATACGTACTATTTTTACTCTC 13329
||||| || || || || || || | ||| || || || | || || |||
Sbjct 3498698 GATTCCCTCGACAGCAGCGAATGCCACCAATCTCTCTGCAAAAGTGCTTCGTTTGTCAGA 3498757
Query 13330 TATCCACTTTCTGGCCCAGTTTGCTTTTTGTTTAACGCAGTTCATATTTTCTATTGCGTT 13389
|||||| || |||||||| ||||| | || | ||| || ||||||||||||
Sbjct 3498758 TATCCATTTGAGGGCCCAGTCGGCTTTGCGCTTGATGCACGGTATTGTTTCTATTGCGTC 3498817
Query 13390 AAATAAATAAtttttttCCTTACTGTCTAAAATATAAGTATCTATCAATAAGC----TAT 13445
|| | ||| || ||| || | | |||| |||| |||||| |
Sbjct 3498818 GAAGAGATATGCGCGTTGATTAAGATC----CTTGACGTATGTATCGATAAGCAGAGAGT 3498873
Query 13446 ACATTTCTGAATGAATATTTTCCATCGCTATTTGGAAACCATAAAAACATCTAGCCTCTG 13505
| |||| ||||||| ||||||||| ||||||||| |||||||| | | ||||| |
Sbjct 3498874 AAGTTTCAGAATGAACGTTTTCCATCATTATTTGGAACCCATAAAAGTAGCGCGCCTCAG 3498933
Query 13506 ATACCTGAACTTCGGAGTAAAATCTTTCTGCTAAGTTTTCGTTAACTATCCCGTCACTAG 13565
| | || |||||| |||| | || | |||||||| || || |||||| |
Sbjct 3498934 CTGCTTGCACTTCGTTTGAAAAGCGCTCCAACAGATTTTCGTTCACGATACCGTCAGAGG 3498993
Query 13566 CAGCaaaaaaaGCAAGTATGTG 13587
| ||||| || ||||| | |||
Sbjct 3498994 CGGCAAAGAATGCAAGGACGTG 3499015
>seq31
Length=1678028
Score = 116 bits (128), Expect = 3e-21
Identities = 296/439 (67%), Gaps = 16/439 (4%)
Strand=Plus/Plus
Query 13151 CATGCAAAATCACAGTGCAATCCTTCATCTCTACTTATTAGCTCGTTTGAAAATGTTAGA 13210
|||||||| || ||||| |||||| || | ||| || || ||||||||||| || |
Sbjct 618616 CATGCAAAGTCGGTGTGCATTCCTTCGTCACGACTGATAAGTTCGTTTGAAAAGGTCAAC 618675
Query 13211 CCCGGCATAAGCCCTCGTTTTTTAATCCAAAATATAGCA-GCAAACGAACCCGaaaaaaa 13269
|| |||| | || |||||||| ||||||||||| ||| || || || || || |||||
Sbjct 618676 CCAGGCAATAATCCACGTTTTTTGATCCAAAATAT-GCACGCGAAAGATCCGGAGAAAAA 618734
Query 13270 TATTCCTTCAACTGCTGCAAACGCTATCAACCTTTCACCATACGT-ACTATTTTTACTCT 13328
|||||||| | |||| || || | | | ||| || | || ||| | || |
Sbjct 618735 AATTCCTTCGATGGCTGAGAATGCAACGAGTCGTTCCGCAAAAGTAACTTGATCGTCT-T 618793
Query 13329 CTATCCACTTTCTGGCCCAGTTTGCTTTTTGTTTAACGCAGTTCATATTTTCTATTGCGT 13388
| ||||| || ||||| ||||||||||||| ||| || |||| || |
Sbjct 618794 CGATCCATCTTAGTGCCCATGCCGCTTTTTGTTTAATGCAAGGAATCGTTTCGATAG--- 618850
Query 13389 TAAATAAATAAtttttttCCTT--ACTG--TCTAAAATATAAGTATCTATCAATAAGCTA 13444
|| | || || | || || | || ||| ||||| || | |||| || |
Sbjct 618851 -AACTGAACAAGAATGATCGTTCGAATGGATCTTGGATATACGTTTGAATCAGCAAAGAA 618909
Query 13445 TACATTTCTGAATGAATATTTTCCATCGCTATTTGGAAACCATAAAAACATCTAGCCTCT 13504
|| |||||||||| || ||||||||| | ||||| ||||| || ||| ||||||
Sbjct 618910 TAAGTTTCTGAATGGATGTTTTCCATCATTGACTGGAATCCATAGAAGGATCGAGCCTCA 618969
Query 13505 GATACCTGAACTTCGGAGTA-AAATCTTTCTGCT-AAGTTTTCGTTAACTATCCCGTCAC 13562
| ||||||| ||| | || | | | | | | ||||||||||| || || |||||
Sbjct 618970 GCGACCTGAATTTC--ACTAGAGAAGTGACGGATCAAGTTTTCGTTTACAATACCGTCGG 619027
Query 13563 TAGCAGCaaaaaaaGCAAG 13581
||||| ||||| || ||
Sbjct 619028 ACGCAGCGAAAAATGCTAG 619046
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 430982237169462
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |