Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lentinula_20edodes_20[genbank_20GCA_5F001562095.1_202016-02-16] 31 sequences; 46,106,741 total letters Query= NC_005179.1 Length=134721 Score E Sequences producing significant alignments: (Bits) Value seq9 149 5e-31 seq23 141 8e-29 seq31 116 3e-21 >seq9 Length=652519 Score = 149 bits (164), Expect = 5e-31 Identities = 272/388 (70%), Gaps = 19/388 (5%) Strand=Plus/Minus Query 13150 ACATGCAAAATCACAGTGCAATCCTTCATCTCTA-CTTATTAGCTCGTTTGAAAATGTTA 13208 ||||||||| ||| |||| ||||||||| | || || || || ||||| || || | Sbjct 464842 ACATGCAAATTCAGTATGCATTCCTTCATCGCCGGCTGATGAGTTCATTTGAGAACGTCA 464783 Query 13209 GACCCGGCATAAGCCCTCGTTTTTTAATCCAAAATATAGCA-GCAAACGAACCCGaaaaa 13267 ||||||||| | |||||| || || ||||||||||| ||| |||||||| | |||||| Sbjct 464782 AACCCGGCATCAACCCTCGCTTCTTCATCCAAAATAT-GCAGGCAAACGACGCAGAAAAA 464724 Query 13268 aaTATTCCTTCAACTGCTGCAAACGCTATCAACCTTTCACCATACGT-ACTATTTTTACT 13326 ||||| ||||| | |||||||| |||| ||| | || || | || | | | || || Sbjct 464723 AATATGCCTTCGATCGCTGCAAATGCTACCAAACGCTCTGCAAATGTGAATCTATTATCT 464664 Query 13327 CTCTATCCACTTTCTGGCCCAGTTTGCTTTTTGTTTAACGCAGTTCATATTTTCTATTGC 13386 | ||||| | ||||| ||||||||| ||||| ||| ||| |||| || | Sbjct 464663 -TGAATCCATTGAAGCGCCCATTTTGCTTTTCTTTTAATGCACGGAATAGTTTCAATAGA 464605 Query 13387 GTTAAATAA-AT--AAtttttttCCTTACTGTCTAAAATATAAGTATCTATCAATAAGCT 13443 ||| ||||| || || || | ||| |||||| | | | ||||||| Sbjct 464604 GTTGAATAACATCGAA---CGCTCTGGAGCATCTCGAATATAGG----TTTGAATAAGCA 464552 Query 13444 A----TACATTTCTGAATGAATATTTTCCATCGCTATTTGGAAACCATAAAAACATCTAG 13499 | || |||| |||||||||||||||||| || ||||||||||| ||||| | | Sbjct 464551 AAGAGTAGGTTTCAGAATGAATATTTTCCATCATAATCTGGAAACCATAGAAACACCGTG 464492 Query 13500 CCTCTGATACCTGAACTTCGGAGTAAAA 13527 |||| | ||||| | |||| | |||| Sbjct 464491 CCTCCGGCACCTGTATTTCGTTGGAAAA 464464 >seq23 Length=3600692 Score = 141 bits (156), Expect = 8e-29 Identities = 297/442 (67%), Gaps = 8/442 (2%) Strand=Plus/Plus Query 13150 ACATGCAAAATCACAGTGCAATCCTTCATCTCTACTTATTAGCTCGTTTGAAAATGTTAG 13209 ||| || ||||| || || |||||||||| || || |||||||||||| | ||||| Sbjct 3498578 ACACGCGAAATCGGTATGTAAACCTTCATCTCGGCTGATGAGCTCGTTTGAATAAGTTAG 3498637 Query 13210 ACCCGGCATAAGCCCTCGTTTTTTAATCCAAAATATAGCAGCAAACGAACCCGaaaaaaa 13269 || ||||| || || || || || | ||| || || | ||| ||||| || |||||||| Sbjct 3498638 GCCAGGCATCAGGCCGCGCTTCTTTAACCAGAAAATGGAAGCGAACGACCCAGAAAAAAA 3498697 Query 13270 TATTCCTTCAACTGCTGCAAACGCTATCAACCTTTCACCATACGTACTATTTTTACTCTC 13329 ||||| || || || || || || | ||| || || || | || || ||| Sbjct 3498698 GATTCCCTCGACAGCAGCGAATGCCACCAATCTCTCTGCAAAAGTGCTTCGTTTGTCAGA 3498757 Query 13330 TATCCACTTTCTGGCCCAGTTTGCTTTTTGTTTAACGCAGTTCATATTTTCTATTGCGTT 13389 |||||| || |||||||| ||||| | || | ||| || |||||||||||| Sbjct 3498758 TATCCATTTGAGGGCCCAGTCGGCTTTGCGCTTGATGCACGGTATTGTTTCTATTGCGTC 3498817 Query 13390 AAATAAATAAtttttttCCTTACTGTCTAAAATATAAGTATCTATCAATAAGC----TAT 13445 || | ||| || ||| || | | |||| |||| |||||| | Sbjct 3498818 GAAGAGATATGCGCGTTGATTAAGATC----CTTGACGTATGTATCGATAAGCAGAGAGT 3498873 Query 13446 ACATTTCTGAATGAATATTTTCCATCGCTATTTGGAAACCATAAAAACATCTAGCCTCTG 13505 | |||| ||||||| ||||||||| ||||||||| |||||||| | | ||||| | Sbjct 3498874 AAGTTTCAGAATGAACGTTTTCCATCATTATTTGGAACCCATAAAAGTAGCGCGCCTCAG 3498933 Query 13506 ATACCTGAACTTCGGAGTAAAATCTTTCTGCTAAGTTTTCGTTAACTATCCCGTCACTAG 13565 | | || |||||| |||| | || | |||||||| || || |||||| | Sbjct 3498934 CTGCTTGCACTTCGTTTGAAAAGCGCTCCAACAGATTTTCGTTCACGATACCGTCAGAGG 3498993 Query 13566 CAGCaaaaaaaGCAAGTATGTG 13587 | ||||| || ||||| | ||| Sbjct 3498994 CGGCAAAGAATGCAAGGACGTG 3499015 >seq31 Length=1678028 Score = 116 bits (128), Expect = 3e-21 Identities = 296/439 (67%), Gaps = 16/439 (4%) Strand=Plus/Plus Query 13151 CATGCAAAATCACAGTGCAATCCTTCATCTCTACTTATTAGCTCGTTTGAAAATGTTAGA 13210 |||||||| || ||||| |||||| || | ||| || || ||||||||||| || | Sbjct 618616 CATGCAAAGTCGGTGTGCATTCCTTCGTCACGACTGATAAGTTCGTTTGAAAAGGTCAAC 618675 Query 13211 CCCGGCATAAGCCCTCGTTTTTTAATCCAAAATATAGCA-GCAAACGAACCCGaaaaaaa 13269 || |||| | || |||||||| ||||||||||| ||| || || || || || ||||| Sbjct 618676 CCAGGCAATAATCCACGTTTTTTGATCCAAAATAT-GCACGCGAAAGATCCGGAGAAAAA 618734 Query 13270 TATTCCTTCAACTGCTGCAAACGCTATCAACCTTTCACCATACGT-ACTATTTTTACTCT 13328 |||||||| | |||| || || | | | ||| || | || ||| | || | Sbjct 618735 AATTCCTTCGATGGCTGAGAATGCAACGAGTCGTTCCGCAAAAGTAACTTGATCGTCT-T 618793 Query 13329 CTATCCACTTTCTGGCCCAGTTTGCTTTTTGTTTAACGCAGTTCATATTTTCTATTGCGT 13388 | ||||| || ||||| ||||||||||||| ||| || |||| || | Sbjct 618794 CGATCCATCTTAGTGCCCATGCCGCTTTTTGTTTAATGCAAGGAATCGTTTCGATAG--- 618850 Query 13389 TAAATAAATAAtttttttCCTT--ACTG--TCTAAAATATAAGTATCTATCAATAAGCTA 13444 || | || || | || || | || ||| ||||| || | |||| || | Sbjct 618851 -AACTGAACAAGAATGATCGTTCGAATGGATCTTGGATATACGTTTGAATCAGCAAAGAA 618909 Query 13445 TACATTTCTGAATGAATATTTTCCATCGCTATTTGGAAACCATAAAAACATCTAGCCTCT 13504 || |||||||||| || ||||||||| | ||||| ||||| || ||| |||||| Sbjct 618910 TAAGTTTCTGAATGGATGTTTTCCATCATTGACTGGAATCCATAGAAGGATCGAGCCTCA 618969 Query 13505 GATACCTGAACTTCGGAGTA-AAATCTTTCTGCT-AAGTTTTCGTTAACTATCCCGTCAC 13562 | ||||||| ||| | || | | | | | | ||||||||||| || || ||||| Sbjct 618970 GCGACCTGAATTTC--ACTAGAGAAGTGACGGATCAAGTTTTCGTTTACAATACCGTCGG 619027 Query 13563 TAGCAGCaaaaaaaGCAAG 13581 ||||| ||||| || || Sbjct 619028 ACGCAGCGAAAAATGCTAG 619046 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 430982237169462