Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lentinula_20edodes_20[genbank_20GCA_5F001562095.1_202016-02-16] 31 sequences; 46,106,741 total letters Query= NC_005309.1 Length=359853 Score E Sequences producing significant alignments: (Bits) Value seq2 145 2e-29 seq23 93.3 1e-13 seq12 84.2 5e-11 >seq2 Length=1585523 Score = 145 bits (160), Expect = 2e-29 Identities = 160/213 (75%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 104348 AGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCT 104407 || || ||||| | || |||||||| || |||||||| || || ||||| | || ||| Sbjct 1022392 AGAACAAGATGAAGAGTCGATTCTTTTTGGATATTATAATCCGAAAGAGTGCGGCCATCT 1022333 Query 104408 TCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCC 104467 ||||| || ||||||||||| || || | ||||| |||||||| || || || |||||| Sbjct 1022332 TCTAGCTGCTTTCCAGCAAAGATAAGACGTTGTTGGTCAGGAGGGATACCCTCCTTATCC 1022273 Query 104468 TGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTC 104527 || |||||||| || ||||| || | |||||| | || ||||| | || || ||| Sbjct 1022272 TGGATCTTTGCCTTCACATTGTCAATGGTATCAGACGACTCGACCTCCAAGGTGATGGTC 1022213 Query 104528 TTACCAGTAAGTGTTTTTACAAATATCTGCATT 104560 || || || | || || ||||| ||||||||| Sbjct 1022212 TTTCCGGTCAAAGTCTTGACAAAGATCTGCATT 1022180 Score = 143 bits (158), Expect = 6e-29 Identities = 156/206 (76%), Gaps = 1/206 (0%) Strand=Plus/Minus Query 104354 AGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGT 104413 ||||| | ||||| ||||||||||| ||||||||||| || || | ||| || || | Sbjct 1022613 AGATGAAGGGTAGACTCTTTCTGAATGTTATAGTCAGAAAGCGTACGACCATCCTCCAAC 1022554 Query 104414 TGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATC 104473 || ||||||||||| || | | |||||| || ||||| || |||||||| ||||||||| Sbjct 1022553 TGCTTTCCAGCAAAGATCAAACGCTGTTGGTCGGGAGGAATGCCTTCTTTGTCCTGAATC 1022494 Query 104474 TTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCA 104533 ||||| || ||||| || | || || || || || || || || || ||||| || Sbjct 1022493 TTTGCCTTGACATTGTCGATAGTGTCAGAAGACTCGACTTCAAGAGTGATCGTCTTTCCG 1022434 Query 104534 GTAAGTGTT-TTTACAAATATCTGCA 104558 || | |||| || ||||| ||||||| Sbjct 1022433 GTCAATGTTCTTCACAAAGATCTGCA 1022408 Score = 125 bits (138), Expect = 2e-23 Identities = 146/197 (74%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422 || || || ||||||||||| || ||||| || || | ||| || || | || || ||| Sbjct 171645 GTCGACTCCTTCTGAATATTGTAATCAGAAAGCGTGCGACCATCCTCCAACTGCTTGCCA 171704 Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482 |||||||| || | ||||| ||||| || || ||||| || ||||| ||||| || ||| Sbjct 171705 GCAAAAATGAGACGTTGTTGGTCAGGCGGAATACCTTCCTTGTCCTGGATCTTCGCCTTT 171764 Query 104483 ACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTT 104542 ||||| || | ||| || | || ||||| || ||||| ||||| || || || || Sbjct 171765 ACATTGTCAATGGTGTCCGACGACTCAACCTCCAGAGTAATCGTCTTTCCTGTGAGGGTC 171824 Query 104543 TTTACAAATATCTGCAT 104559 || || || |||||||| Sbjct 171825 TTGACGAAGATCTGCAT 171841 Score = 122 bits (134), Expect = 2e-22 Identities = 165/230 (72%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 104330 ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCA 104389 || || |||| || | ||| || || || | || || |||||||||||||| || ||| Sbjct 171840 ATACCTCCTCGAAGACGAAGGACAAGGTGGAGGGTTGACTCTTTCTGAATATTGTAATCA 171899 Query 104390 GATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGA 104449 || || || | ||| || || | || || ||||||||||| || | ||||| ||||| Sbjct 171900 GAAAGCGTGCGACCATCCTCCAACTGCTTGCCAGCAAAAATGAGACGTTGTTGGTCAGGC 171959 Query 104450 GGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCT 104509 || || ||||| || ||||| || || || || ||||| || | || || | || Sbjct 171960 GGAATACCTTCCTTGTCCTGGATTTTCGCCTTAACATTGTCAATAGTGTCAGACGACTCA 172019 Query 104510 ACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 ||||| || || || ||||| || || ||||| || || || |||||||| Sbjct 172020 ACCTCAAGAGTGATCGTCTTTCCCGTGAGTGTCTTGACGAAGATCTGCAT 172069 Score = 100 bits (110), Expect = 7e-16 Identities = 97/125 (78%), Gaps = 0/125 (0%) Strand=Plus/Minus Query 104330 ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCA 104389 ||||| || | || | ||| || ||||| | |||||||| |||||||| || |||||| Sbjct 1022182 ATTCCACCACGAAGACGAAGAACAAGATGAAGAGTAGATTCCTTCTGAATGTTGTAGTCA 1022123 Query 104390 GATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGA 104449 || ||||| | ||| || || ||||| ||||| ||||| || | | ||||||||||||| Sbjct 1022122 GAAAGAGTGCGACCATCCTCGAGTTGCTTTCCGGCAAAGATCAATCGCTGTTGATCAGGA 1022063 Query 104450 GGTAT 104454 || || Sbjct 1022062 GGAAT 1022058 Score = 86.0 bits (94), Expect = 1e-11 Identities = 82/105 (78%), Gaps = 0/105 (0%) Strand=Plus/Minus Query 104456 CCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCT 104515 ||||| || || || ||||| ||||| ||||| || | || || || ||| ||||| Sbjct 1021995 CCTTCCTTGTCTTGGATCTTGGCTTTGACATTGTCAATAGTGTCAGAAGATTCAACCTCA 1021936 Query 104516 AGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCATT 104560 || ||||||||||| |||||||| ||||| || ||||| |||||| Sbjct 1021935 AGGGTAATAGTCTTCCCAGTAAGAGTTTTGACGAATATTTGCATT 1021891 >seq23 Length=3600692 Score = 93.3 bits (102), Expect = 1e-13 Identities = 148/211 (70%), Gaps = 11/211 (5%) Strand=Plus/Minus Query 269081 AAATCTGAATGGGCTCTGAAATGGATA-------AACGATAGCGCGCCTTACGGAGAAAG 269133 ||| | || ||||| || ||||||||| ||||| ||| | || | ||| || Sbjct 3498784 AAAGCCGACTGGGCCCTCAAATGGATATCTGACAAACGA-AGCAC---TTTTGCAGAGAG 3498729 Query 269134 GTTAGTTGCTTTTGCCGCTGTAGAAGGTATATTCTTTTCGGGGTCTTTTGCCGCTATCTT 269193 || || || || || ||||| || || || || ||||| ||||| || || | || || Sbjct 3498728 ATTGGTGGCATTCGCTGCTGTCGAGGGAATCTTTTTTTCTGGGTCGTTCGCTTCCATTTT 3498669 Query 269194 TTGGTTGAAGAAAAGAGGCCTTATGCCAGGATTAACTTTCTCTAACGAATTGATAAGCAG 269253 ||||| ||||| | ||||| ||||| || |||||| || ||||| | || ||| | Sbjct 3498668 CTGGTTAAAGAAGCGCGGCCTGATGCCTGGCCTAACTTATTCAAACGAGCTCATCAGCCG 3498609 Query 269254 GGACGAAGGTTTACACTGCGACTTCGCTTGT 269284 || ||||||||||| ||| ||||| ||| Sbjct 3498608 AGATGAAGGTTTACATACCGATTTCGCGTGT 3498578 >seq12 Length=4000690 Score = 84.2 bits (92), Expect = 5e-11 Identities = 85/111 (77%), Gaps = 0/111 (0%) Strand=Plus/Minus Query 104344 CCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACC 104403 || |||||| | || | || ||||| |||||||| |||||||| || ||||||| || Sbjct 1092387 CCGAAGTACCAAGTGGAGCGTCGATTCCTTCTGAATGTTATAGTCGGAAAGAGTTCGTCC 1092328 Query 104404 GTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTAT 104454 ||||| ||||| ||||| || || || | | |||||||||||||| || Sbjct 1092327 ATCTTCGAGTTGCTTTCCGGCGAAGATCAAACGTTGTTGATCAGGAGGAAT 1092277 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1151397942678948