Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lentinula_20edodes_20[genbank_20GCA_5F001562095.1_202016-02-16] 31 sequences; 46,106,741 total letters Query= NC_006639.1 Length=24748 Score E Sequences producing significant alignments: (Bits) Value seq23 127 3e-25 seq15 114 2e-21 seq27 98.7 2e-16 seq1 96.9 5e-16 seq7 93.3 7e-15 >seq23 Length=3600692 Score = 127 bits (140), Expect = 3e-25 Identities = 118/150 (79%), Gaps = 0/150 (0%) Strand=Plus/Minus Query 16471 AGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTC 16530 ||| |||||||| || || || |||||||| || ||||||||||| ||||| ||| |||| Sbjct 674346 AGGTATCACCAAACCTGCGATTCGTCGTCTCGCCCGTCGTGGTGGTGTCAAACGTATCTC 674287 Query 16531 TGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCA 16590 || || |||||||||||| || | ||| || |||||||||||| ||| ||||||| Sbjct 674286 CGGTCTGATCTATGAAGAGACGCGAGGTGTATTAAAGATCTTCCTCGAGAATGTTATCCG 674227 Query 16591 TGATGCTTTCCACTATACCGAGCACGCTAA 16620 ||| || | ||| ||||||||||| || Sbjct 674226 TGACTCTGTTACCTACACCGAGCACGCGAA 674197 >seq15 Length=344103 Score = 114 bits (126), Expect = 2e-21 Identities = 121/158 (77%), Gaps = 1/158 (1%) Strand=Plus/Plus Query 16471 AGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTC 16530 |||||||||||| || || || |||||||| || ||||||||||||||||||||| |||| Sbjct 274505 AGGAATCACCAAACCTGCCATTCGTCGTCTCGCCCGTCGTGGTGGAGTCAAGCGTATCTC 274564 Query 16531 TGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCA 16590 ||| | | || ||||| | ||| | || ||||||| ||||| | | ||||| | Sbjct 274565 TGGTCTCATTTACGAAGAAACTCGCGGCGTACTGAAGATTTTCCTGGAAAATGTTATTCG 274624 Query 16591 TGATGCTTTCCACTATACCGAGCACGCTAAAC-GTAAG 16627 |||| | | || |||||||||||||||| ||||| Sbjct 274625 TGATTCCGTAACATACACCGAGCACGCTAAACGGTAAG 274662 >seq27 Length=5330550 Score = 98.7 bits (108), Expect = 2e-16 Identities = 118/158 (75%), Gaps = 2/158 (1%) Strand=Plus/Minus Query 16471 AGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTC 16530 ||| ||||| || || |||||||||||||| || ||||||||||| || |||||| |||| Sbjct 4786388 AGGTATCACAAAACCCGCTATCCGTCGTCTCGCCCGTCGTGGTGGTGTGAAGCGTATCTC 4786329 Query 16531 TGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCA 16590 || | |||| | ||| | |||| ||| | ||||||||| | ||| ||| || | Sbjct 4786328 CGGTCTCATCTACG-AGAAACCCGTGGTGTGCTCAAGATCTTCTTGGAGAACGTCATTCG 4786270 Query 16591 TGATGCTTTCCACTATACCGAGCACGCTAAAC-GTAAG 16627 ||| || || || || || |||||||||| ||||| Sbjct 4786269 CGATTCTGTCACGTACACTGAACACGCTAAACGGTAAG 4786232 >seq1 Length=5311644 Score = 96.9 bits (106), Expect = 5e-16 Identities = 113/153 (74%), Gaps = 0/153 (0%) Strand=Plus/Plus Query 16471 AGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTC 16530 ||| || ||||| || ||||| || ||||| ||||||||||| || || |||||| | || Sbjct 1721473 AGGTATTACCAAACCCGCTATTCGCCGTCTTGCTCGTCGTGGAGGTGTAAAGCGTATTTC 1721532 Query 16531 TGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCA 16590 ||| | |||| ||||| | |||| ||| || ||||||||||| ||| || || | Sbjct 1721533 TGGTCTCATCTACGAAGAAACCCGTGGTGTATTAAAGATCTTCCTTGAGAATGTCATTCG 1721592 Query 16591 TGATGCTTTCCACTATACCGAGCACGCTAAACG 16623 ||| || | ||||| || || |||||||| Sbjct 1721593 TGACTCTGTAACGTATACTGAACATGCTAAACG 1721625 >seq7 Length=934971 Score = 93.3 bits (102), Expect = 7e-15 Identities = 85/106 (80%), Gaps = 1/106 (1%) Strand=Plus/Plus Query 16471 AGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTC 16530 ||| || || ||||| ||||| |||||||| || |||||||| || ||||||||| | || Sbjct 699909 AGGCATAACAAAGCCTGCTATTCGTCGTCTCGCACGTCGTGGAGGTGTCAAGCGTATTTC 699968 Query 16531 TGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTC 16576 ||| || |||||||||||| ||||| ||| | || || |||||| Sbjct 699969 TGGTCTGATCTATGAAGAGACTCGTGGTGTCCTCAA-ATTTTCCTC 700013 Score = 82.4 bits (90), Expect = 1e-11 Identities = 82/106 (77%), Gaps = 3/106 (3%) Strand=Plus/Minus Query 16471 AGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTC 16530 ||| || || ||||| ||||| |||||||| || ||| | |||| | || ||| |||| Sbjct 772997 AGGTATAACAAAGCCCGCTATTCGTCGTCTTGCGCGTGGAGGTG---TTAAACGTATCTC 772941 Query 16531 TGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTC 16576 ||| | |||| ||||||| ||||| |||| | |||||||||||| Sbjct 772940 TGGTCTTATCTACGAAGAGACTCGTGGTGTTCTTAAGATCTTCCTC 772895 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 79075171656483