Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lentinula_20edodes_20[genbank_20GCA_5F001562095.1_202016-02-16] 31 sequences; 46,106,741 total letters Query= NC_006966.1 Length=166259 Score E Sequences producing significant alignments: (Bits) Value seq9 122 9e-23 seq29 91.5 2e-13 seq23 84.2 2e-11 >seq9 Length=652519 Score = 122 bits (134), Expect = 9e-23 Identities = 172/238 (72%), Gaps = 3/238 (1%) Strand=Plus/Minus Query 21475 ACATGCAAAATCACAATGCAAACCTTCATC-CCTACTTATTAATTCATTAGAAAATGTTA 21533 ||||||||| ||| ||||| |||||||| || || || | |||||| || || || | Sbjct 464842 ACATGCAAATTCAGTATGCATTCCTTCATCGCCGGCTGATGAGTTCATTTGAGAACGTCA 464783 Query 21534 AACCGGGCATTAATCCTCTCTTTTTTAACCAAAATATTGACGCAAATGCTCCTGAAAAGA 21593 |||| ||||| || |||| ||| || | ||||||||| | ||||| | | ||||| | Sbjct 464782 AACCCGGCATCAACCCTCGCTTCTTCATCCAAAATATGCAGGCAAACGACGCAGAAAAAA 464723 Query 21594 AAATGCCCTCAACGGCAGCAAATGCAACTAATCGTTCACCGTATGTAGATTCT-TTATCC 21652 | ||||| || | || |||||||| || || || || | |||| || ||| ||||| Sbjct 464722 ATATGCCTTCGATCGCTGCAAATGCTACCAAACGCTCTGCAAATGT-GAATCTATTATCT 464664 Query 21653 AATATCCATTTTTCTGCCCATTTTGCCTTTTCTTTAATACAATCAATTGTATCAATAG 21710 ||||||| ||||||||||| ||| |||||| || ||| || ||||||| Sbjct 464663 TGAATCCATTGAAGCGCCCATTTTGCTTTTCTTTTAATGCACGGAATAGTTTCAATAG 464606 >seq29 Length=5849119 Score = 91.5 bits (100), Expect = 2e-13 Identities = 107/145 (74%), Gaps = 0/145 (0%) Strand=Plus/Minus Query 21490 ATGCAAACCTTCATCCCTACTTATTAATTCATTAGAAAATGTTAAACCGGGCATTAATCC 21549 ||||| ||| ||||| | ||| || | || || || || | || || ||||||||||| Sbjct 5169098 ATGCATACCCTCATCACGACTGATGAGCTCGTTTGAGAACGCCAAGCCAGGCATTAATCC 5169039 Query 21550 TCTCTTTTTTAACCAAAATATTGACGCAAATGCTCCTGAAAAGAAAATGCCCTCAACGGC 21609 | ||| || | |||||| || ||||| || | || || ||||||||||| ||||| || Sbjct 5169038 ACGCTTCTTCATCCAAAAGATGGACGCGAAGGAGCCAGAGAAGAAAATGCCTTCAACAGC 5168979 Query 21610 AGCAAATGCAACTAATCGTTCACCG 21634 |||||| || || | || || ||| Sbjct 5168978 AGCAAAGGCTACGAGACGCTCGCCG 5168954 >seq23 Length=3600692 Score = 84.2 bits (92), Expect = 2e-11 Identities = 134/190 (71%), Gaps = 2/190 (1%) Strand=Plus/Plus Query 21475 ACATGCAAAATCACAATGCAAACCTTCATCCCTACTTATTAATTCATTAGAAAATGTTAA 21534 ||| || ||||| ||| ||||||||||| | || || | || || ||| | |||| Sbjct 3498578 ACACGCGAAATCGGTATGTAAACCTTCATCTCGGCTGATGAGCTCGTTTGAATAAGTTAG 3498637 Query 21535 ACCGGGCATTAATCCTCTCTTTTTTAACCAAAATATTGACGCAAATGCTCCTGAAAAGAA 21594 || ||||| | || | ||| |||||||| || || || || || | || ||||| || Sbjct 3498638 GCCAGGCATCAGGCCGCGCTTCTTTAACCAGAAAATGGAAGCGAACGACCCAGAAAAAAA 3498697 Query 21595 AATGCCCTCAACGGCAGCAAATGCAACTAATCGTTCACCGTATGTAGATTC-TTTATCCA 21653 || ||||| || ||||| ||||| || |||| || | | || | ||| ||| || Sbjct 3498698 GATTCCCTCGACAGCAGCGAATGCCACCAATCTCTCTGCAAAAGT-GCTTCGTTTGTCAG 3498756 Query 21654 ATATCCATTT 21663 |||||||||| Sbjct 3498757 ATATCCATTT 3498766 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 531900593888440