Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Lentinula_20edodes_20[genbank_20GCA_5F001562095.1_202016-02-16]
31 sequences; 46,106,741 total letters
Query= NC_006998.1
Length=194711
Score E
Sequences producing significant alignments: (Bits) Value
seq29 196 6e-45
seq23 181 1e-40
seq31 111 2e-19
>seq29
Length=5849119
Score = 196 bits (216), Expect = 6e-45
Identities = 385/564 (68%), Gaps = 8/564 (1%)
Strand=Plus/Minus
Query 33304 CATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGT 33363
|| ||||| ||| |||| |||||| || | ||| || || ||||| || |||| |
Sbjct 5169112 CAGGCGAAGTCGGTATGCATACCCTCATCACGACTGATGAGCTCGTTTGAGAACGCCAAG 5169053
Query 33364 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCAGAAAAGAAG 33423
|| ||||||| |||||||| || | |||||| ||||| ||||| || ||||| |||||
Sbjct 5169052 CCAGGCATTAATCCACGCTTCTTCATCCAAAAGATGGACGCGAAGGAGCCAGAGAAGAAA 5168993
Query 33424 ATTCCTTCTACTGCAGCAAAGGCAATAAGTCTCTCTCC-ATAACCG-GCGCT-GTCATGT 33480
|| ||||| || ||||||||||| | || | ||| || | ||||| | | | ||||
Sbjct 5168992 ATGCCTTCAACAGCAGCAAAGGCTACGAGACGCTCGCCGAAAACCGAGTGTTCGTCACTG 5168933
Query 33481 ATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTA 33540
||||| | ||||||| |||||||| || | ||||| || || || || |||| |
Sbjct 5168932 ATCCAGTGCAGAGCCCACTCGGCCTTGCGCTTGATGCAAGGAATAGTCTCGATAGCATCA 5168873
Query 33541 AAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATACATT 33600
|| || | | ||| | ||||| | || || ||||| | |||| || |
Sbjct 5168872 AAAAGGAAATCACGTTCGACAGGGTCTTTGATGTATGTGTCGATGAGAAGAGAGTAAGTC 5168813
Query 33601 TCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATC 33660
|| || |||||||| || || ||||| || |||||||| || | ||||| | | |
Sbjct 5168812 TCGGAGTGAATGTTCTCCATCATAATCTGGAACCCGTAGAAGCAACGTGCCTCAGCGACC 5168753
Query 33661 TGTACTTCTGTACAAAATCGTTCCGCCAAATTTTCATTCACTATTCCGTCACTGGCTGCA 33720
|||||||| | | || ||||| | ||| || || || || || ||| ||| |||
Sbjct 5168752 TGTACTTCGTTCGAGAAGCGTTCGAGAAGATTCTCGTTGACAATGCCATCAGAGGCGGCA 5168693
Query 33721 AAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTT----AGTTTATTCCA 33776
|| ||||| | ||| | || || || |||| ||| || | || |||||
Sbjct 5168692 AAGAACGCGAGGACACGGGAGATGAAGAATCGTTCG-CTGTCATTCAGGCGGTTGTTCCA 5168634
Query 33777 ATCATTGATATCTTTAGATATATCTACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTT 33836
|||| | ||||| |||| ||| | |||||| | ||||| || || ||||| |||||
Sbjct 5168633 GTCATGAAGGTCTTTTGATAAATCCATCTCTTCCGCAGTCCAGAAAGAGGCCTCGGCCTT 5168574
Query 33837 TTTATACATGTTCCAGATGTCATA 33860
|| ||||| | ||| || | |||
Sbjct 5168573 CTTGTACATTTGCCATATCTGATA 5168550
>seq23
Length=3600692
Score = 181 bits (200), Expect = 1e-40
Identities = 376/555 (68%), Gaps = 6/555 (1%)
Strand=Plus/Plus
Query 33303 ACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAG 33362
||| ||||||||| || | ||| || |||| || || || ||||| ||| | || ||
Sbjct 3498578 ACACGCGAAATCGGTATGTAAACCTTCATCTCGGCTGATGAGCTCGTTTGAATAAGTTAG 3498637
Query 33363 TCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCAGAAAAGAA 33422
|| ||||| ||||| ||||| || | ||| || ||||||||||| || |||||||| ||
Sbjct 3498638 GCCAGGCATCAGGCCGCGCTTCTTTAACCAGAAAATGGAAGCGAACGACCCAGAAAAAAA 3498697
Query 33423 GATTCCTTCTACTGCAGCAAAGGCAATAAGTCTCTCTCCATAA--CCGGCG-CTGTCATG 33479
|||||| || || ||||| || || | | ||||||| || || | || |||||
Sbjct 3498698 GATTCCCTCGACAGCAGCGAATGCCACCAATCTCTCTGCAAAAGTGCTTCGTTTGTCAGA 3498757
Query 33480 TATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATT 33539
|||||| || | ||||| ||||| || || | || || || |||||||| || |
Sbjct 3498758 TATCCATTTGAGGGCCCAGTCGGCTTTGCGCTTGATGCACGGTATTGTTTCTATTGCGTC 3498817
Query 33540 AAAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATACAT 33599
|||||||| || |||| ||| || || || |||||||| | ||| || |
Sbjct 3498818 GAAGAGATATGCGCGTTGATTAAGATCCTTGACGTATGTATCGATAAGCAGAGAGTAAGT 3498877
Query 33600 TTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTAAT 33659
||| ||||||| |||||| || || || || || || || | | ||||| |
Sbjct 3498878 TTCAGAATGAACGTTTTCCATCATTATTTGGAACCCATAAAAGTAGCGCGCCTCAGCTGC 3498937
Query 33660 CTGTACTTCTGTACAAAATCGTTCCGCCAAATTTTCATTCACTATTCCGTCACTGGCTGC 33719
|| ||||| | |||| || ||| || |||||| ||||| || |||||| ||| ||
Sbjct 3498938 TTGCACTTCGTTTGAAAAGCGCTCCAACAGATTTTCGTTCACGATACCGTCAGAGGCGGC 3498997
Query 33720 AAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTC-TGGTGT--TAGTTTATTCCA 33776
||| || || | || || | || |||| ||||| | || | | | | |||||
Sbjct 3498998 AAAGAATGCAAGGACGTGGGTGATGAAATGACGCTCGTCATTGTTTAATCGCTCGTTCCA 3499057
Query 33777 ATCATTGATATCTTTAGATATATCTACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTT 33836
|| | ||| | || | || | |||||| ||||| || ||||| ||||| ||
Sbjct 3499058 GTCGACAAGATCATGAGTGAGGTCAATCTCTTCCGAGGTCCAGAACGATGCTTCTGCTTT 3499117
Query 33837 TTTATACATGTTCCA 33851
|| ||||| | |||
Sbjct 3499118 CTTGTACATCTGCCA 3499132
>seq31
Length=1678028
Score = 111 bits (122), Expect = 2e-19
Identities = 134/180 (74%), Gaps = 2/180 (1%)
Strand=Plus/Plus
Query 33028 ACACGTTTTTCGAAAAAATTAGTTTTTCCTTCCAATGATATATTTTCCATGAAATCAAAC 33087
|| || ||||| |||||||| ||||||||||||| ||||| | ||||||||||||||
Sbjct 618286 ACTCGCTTTTCAAAAAAATTTGTTTTTCCTTCCAGAGATATCATGTCCATGAAATCAAAA 618345
Query 33088 GGATTGGTAACATTATAAAtttttttAAATCCCAA-TTCAGAAATCAATCTATCCGCGAC 33146
|| || | || || || | ||| || |||||| | || || || || |||||| |
Sbjct 618346 GGGTTTCTGACGTTGTATAATTTGTT-GTTCCCAAGTGCATTAAGCAGTCCATCCGCAAT 618404
Query 33147 GAATTCTATATATGTTTTCATCATTTCACAATTCATTCCTATAAGTTTAACTGGAAGAGC 33206
||| || || ||| | ||||| ||| ||||||||||||| | | |||||||| |||
Sbjct 618405 GAACTCGATGTATATGCACATCAGCTCATAATTCATTCCTATCAAGTCAACTGGAATAGC 618464
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 622946958607960
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |