Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lentinula_20edodes_20[genbank_20GCA_5F001562095.1_202016-02-16] 31 sequences; 46,106,741 total letters Query= NC_006998.1 Length=194711 Score E Sequences producing significant alignments: (Bits) Value seq29 196 6e-45 seq23 181 1e-40 seq31 111 2e-19 >seq29 Length=5849119 Score = 196 bits (216), Expect = 6e-45 Identities = 385/564 (68%), Gaps = 8/564 (1%) Strand=Plus/Minus Query 33304 CATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGT 33363 || ||||| ||| |||| |||||| || | ||| || || ||||| || |||| | Sbjct 5169112 CAGGCGAAGTCGGTATGCATACCCTCATCACGACTGATGAGCTCGTTTGAGAACGCCAAG 5169053 Query 33364 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCAGAAAAGAAG 33423 || ||||||| |||||||| || | |||||| ||||| ||||| || ||||| ||||| Sbjct 5169052 CCAGGCATTAATCCACGCTTCTTCATCCAAAAGATGGACGCGAAGGAGCCAGAGAAGAAA 5168993 Query 33424 ATTCCTTCTACTGCAGCAAAGGCAATAAGTCTCTCTCC-ATAACCG-GCGCT-GTCATGT 33480 || ||||| || ||||||||||| | || | ||| || | ||||| | | | |||| Sbjct 5168992 ATGCCTTCAACAGCAGCAAAGGCTACGAGACGCTCGCCGAAAACCGAGTGTTCGTCACTG 5168933 Query 33481 ATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTA 33540 ||||| | ||||||| |||||||| || | ||||| || || || || |||| | Sbjct 5168932 ATCCAGTGCAGAGCCCACTCGGCCTTGCGCTTGATGCAAGGAATAGTCTCGATAGCATCA 5168873 Query 33541 AAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATACATT 33600 || || | | ||| | ||||| | || || ||||| | |||| || | Sbjct 5168872 AAAAGGAAATCACGTTCGACAGGGTCTTTGATGTATGTGTCGATGAGAAGAGAGTAAGTC 5168813 Query 33601 TCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATC 33660 || || |||||||| || || ||||| || |||||||| || | ||||| | | | Sbjct 5168812 TCGGAGTGAATGTTCTCCATCATAATCTGGAACCCGTAGAAGCAACGTGCCTCAGCGACC 5168753 Query 33661 TGTACTTCTGTACAAAATCGTTCCGCCAAATTTTCATTCACTATTCCGTCACTGGCTGCA 33720 |||||||| | | || ||||| | ||| || || || || || ||| ||| ||| Sbjct 5168752 TGTACTTCGTTCGAGAAGCGTTCGAGAAGATTCTCGTTGACAATGCCATCAGAGGCGGCA 5168693 Query 33721 AAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTT----AGTTTATTCCA 33776 || ||||| | ||| | || || || |||| ||| || | || ||||| Sbjct 5168692 AAGAACGCGAGGACACGGGAGATGAAGAATCGTTCG-CTGTCATTCAGGCGGTTGTTCCA 5168634 Query 33777 ATCATTGATATCTTTAGATATATCTACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTT 33836 |||| | ||||| |||| ||| | |||||| | ||||| || || ||||| ||||| Sbjct 5168633 GTCATGAAGGTCTTTTGATAAATCCATCTCTTCCGCAGTCCAGAAAGAGGCCTCGGCCTT 5168574 Query 33837 TTTATACATGTTCCAGATGTCATA 33860 || ||||| | ||| || | ||| Sbjct 5168573 CTTGTACATTTGCCATATCTGATA 5168550 >seq23 Length=3600692 Score = 181 bits (200), Expect = 1e-40 Identities = 376/555 (68%), Gaps = 6/555 (1%) Strand=Plus/Plus Query 33303 ACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAG 33362 ||| ||||||||| || | ||| || |||| || || || ||||| ||| | || || Sbjct 3498578 ACACGCGAAATCGGTATGTAAACCTTCATCTCGGCTGATGAGCTCGTTTGAATAAGTTAG 3498637 Query 33363 TCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCAGAAAAGAA 33422 || ||||| ||||| ||||| || | ||| || ||||||||||| || |||||||| || Sbjct 3498638 GCCAGGCATCAGGCCGCGCTTCTTTAACCAGAAAATGGAAGCGAACGACCCAGAAAAAAA 3498697 Query 33423 GATTCCTTCTACTGCAGCAAAGGCAATAAGTCTCTCTCCATAA--CCGGCG-CTGTCATG 33479 |||||| || || ||||| || || | | ||||||| || || | || ||||| Sbjct 3498698 GATTCCCTCGACAGCAGCGAATGCCACCAATCTCTCTGCAAAAGTGCTTCGTTTGTCAGA 3498757 Query 33480 TATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATT 33539 |||||| || | ||||| ||||| || || | || || || |||||||| || | Sbjct 3498758 TATCCATTTGAGGGCCCAGTCGGCTTTGCGCTTGATGCACGGTATTGTTTCTATTGCGTC 3498817 Query 33540 AAAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATACAT 33599 |||||||| || |||| ||| || || || |||||||| | ||| || | Sbjct 3498818 GAAGAGATATGCGCGTTGATTAAGATCCTTGACGTATGTATCGATAAGCAGAGAGTAAGT 3498877 Query 33600 TTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTAAT 33659 ||| ||||||| |||||| || || || || || || || | | ||||| | Sbjct 3498878 TTCAGAATGAACGTTTTCCATCATTATTTGGAACCCATAAAAGTAGCGCGCCTCAGCTGC 3498937 Query 33660 CTGTACTTCTGTACAAAATCGTTCCGCCAAATTTTCATTCACTATTCCGTCACTGGCTGC 33719 || ||||| | |||| || ||| || |||||| ||||| || |||||| ||| || Sbjct 3498938 TTGCACTTCGTTTGAAAAGCGCTCCAACAGATTTTCGTTCACGATACCGTCAGAGGCGGC 3498997 Query 33720 AAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTC-TGGTGT--TAGTTTATTCCA 33776 ||| || || | || || | || |||| ||||| | || | | | | ||||| Sbjct 3498998 AAAGAATGCAAGGACGTGGGTGATGAAATGACGCTCGTCATTGTTTAATCGCTCGTTCCA 3499057 Query 33777 ATCATTGATATCTTTAGATATATCTACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTT 33836 || | ||| | || | || | |||||| ||||| || ||||| ||||| || Sbjct 3499058 GTCGACAAGATCATGAGTGAGGTCAATCTCTTCCGAGGTCCAGAACGATGCTTCTGCTTT 3499117 Query 33837 TTTATACATGTTCCA 33851 || ||||| | ||| Sbjct 3499118 CTTGTACATCTGCCA 3499132 >seq31 Length=1678028 Score = 111 bits (122), Expect = 2e-19 Identities = 134/180 (74%), Gaps = 2/180 (1%) Strand=Plus/Plus Query 33028 ACACGTTTTTCGAAAAAATTAGTTTTTCCTTCCAATGATATATTTTCCATGAAATCAAAC 33087 || || ||||| |||||||| ||||||||||||| ||||| | |||||||||||||| Sbjct 618286 ACTCGCTTTTCAAAAAAATTTGTTTTTCCTTCCAGAGATATCATGTCCATGAAATCAAAA 618345 Query 33088 GGATTGGTAACATTATAAAtttttttAAATCCCAA-TTCAGAAATCAATCTATCCGCGAC 33146 || || | || || || | ||| || |||||| | || || || || |||||| | Sbjct 618346 GGGTTTCTGACGTTGTATAATTTGTT-GTTCCCAAGTGCATTAAGCAGTCCATCCGCAAT 618404 Query 33147 GAATTCTATATATGTTTTCATCATTTCACAATTCATTCCTATAAGTTTAACTGGAAGAGC 33206 ||| || || ||| | ||||| ||| ||||||||||||| | | |||||||| ||| Sbjct 618405 GAACTCGATGTATATGCACATCAGCTCATAATTCATTCCTATCAAGTCAACTGGAATAGC 618464 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 622946958607960