Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lentinula_20edodes_20[genbank_20GCA_5F001562095.1_202016-02-16] 31 sequences; 46,106,741 total letters Query= NC_007346.1 Length=407339 Score E Sequences producing significant alignments: (Bits) Value seq23 107 5e-18 seq1 105 2e-17 seq29 104 6e-17 >seq23 Length=3600692 Score = 107 bits (118), Expect = 5e-18 Identities = 160/226 (71%), Gaps = 6/226 (3%) Strand=Plus/Minus Query 363735 TTACATTCGCGGCACAGGGGGATACTCGAATGGGCTGGTTCCCATGCTTCGTGTGTTTGA 363794 ||||||| |||||| || ||||||||||| | || || |||||||| | || | Sbjct 923113 TTACATTGCCGGCACGAATGGGTACTCGAATGGTATTGTGCCAATGCTTCGGGCGT---A 923057 Query 363795 CAA---TACTGCGAGGTACGTCGACCAGGGTGGAGGAAAGCGCAAAGGGGCGTTTGCTAT 363851 ||| |||||| | || |||||||| ||||| ||||| ||||| || ||||| Sbjct 923056 CAATGCTACTGCACGATATGTCGACCAAGGTGGTAACAAGCGTCCTGGGGCTTTCGCTAT 922997 Query 363852 GTATCTCGAGCCTCATCATGCCGATATTTTTGAGTTTCTTGAGCTCCGGAAAAACACGGG 363911 |||||||| ||| ||||| ||||| || | | | | || | |||| || || Sbjct 922996 CTATCTCGAACCTTGGCATGCTGATATCTTCGCGATGATCGATTTGAGGAAGAATCATGG 922937 Query 363912 AAAAGAGGAATTGCGTGCACGTGATCTGTTCTATGCACTTTGGGTT 363957 ||||||||| |||| || |||||| | |||||||| || ||| || Sbjct 922936 CAAAGAGGAAGTGCGCGCCCGTGATTTATTCTATGCTCTATGGATT 922891 Score = 89.7 bits (98), Expect = 1e-12 Identities = 106/144 (74%), Gaps = 0/144 (0%) Strand=Plus/Minus Query 22501 GCATTTGCTGTGGTTGAAGGCATTTTCTTTTCTGGAGCATTTTGTGCAATCTTTTGGCTa 22560 ||||| |||| || || || || || |||||||| | || | | || || ||| || Sbjct 3498721 GCATTCGCTGCTGTCGAGGGAATCTTTTTTTCTGGGTCGTTCGCTTCCATTTTCTGGTTA 3498662 Query 22561 aaaaaaCGTGCAATTATGCCGGGTCTAACGTTTTCAAATGAGTTAATTAGCCGAGATGAG 22620 || || || | | ||||| || ||||| | |||||| ||| | || ||||||||||| Sbjct 3498661 AAGAAGCGCGGCCTGATGCCTGGCCTAACTTATTCAAACGAGCTCATCAGCCGAGATGAA 3498602 Query 22621 GGTCTTCATACCGATTTTGCGTGT 22644 ||| | ||||||||||| |||||| Sbjct 3498601 GGTTTACATACCGATTTCGCGTGT 3498578 >seq1 Length=5311644 Score = 105 bits (116), Expect = 2e-17 Identities = 156/221 (71%), Gaps = 0/221 (0%) Strand=Plus/Plus Query 363743 GCGGCACAGGGGGATACTCGAATGGGCTGGTTCCCATGCTTCGTGTGTTTGACAATACTG 363802 ||||||| || ||||| |||||| | || || ||||||| || ||| || ||| | Sbjct 5026100 GCGGCACGAATGGTTACTCCAATGGGATAGTGCCAATGCTTCAGGTCTTTAACGCTACCG 5026159 Query 363803 CGAGGTACGTCGACCAGGGTGGAGGAAAGCGCAAAGGGGCGTTTGCTATGTATCTCGAGC 363862 | | || || || ||||| || || || ||| | ||||| || ||| | || | Sbjct 5026160 CACGCTATGTAGATCAGGGCGGCAACAAACGTCCAGGTTCATTTGCAATTTATATAGAAC 5026219 Query 363863 CTCATCATGCCGATATTTTTGAGTTTCTTGAGCTCCGGAAAAACACGGGAAAAGAGGAAT 363922 || ||||| || ||||| ||| || | || || |||||||| |||||||||||| Sbjct 5026220 CTTGGCATGCGGACATTTTCGAGATTATCGATCTGCGGAAAAATCATGGAAAAGAGGAAC 5026279 Query 363923 TGCGTGCACGTGATCTGTTCTATGCACTTTGGGTTTCTGAC 363963 | || || |||||| |||||||||| | |||||| | ||| Sbjct 5026280 TACGGGCTCGTGATTTGTTCTATGCGTTGTGGGTTCCGGAC 5026320 >seq29 Length=5849119 Score = 104 bits (114), Expect = 6e-17 Identities = 147/206 (71%), Gaps = 3/206 (1%) Strand=Plus/Plus Query 22441 AAGGCAGATTGGGCGCTGAAATGGATGAACAATGAACGTTCA---TTCGCGGAACGTCTT 22497 ||||| || ||||| ||| | ||||| | | |||| || |||| || ||||| Sbjct 5168907 AAGGCCGAGTGGGCTCTGCACTGGATCAGTGACGAACACTCGGTTTTCGGCGAGCGTCTC 5168966 Query 22498 ATTGCATTTGCTGTGGTTGAAGGCATTTTCTTTTCTGGAGCATTTTGTGCAATCTTTTGG 22557 | || ||||||| ||||||||||||||||| ||||| | || | ||||||||| Sbjct 5168967 GTAGCCTTTGCTGCTGTTGAAGGCATTTTCTTCTCTGGCTCCTTCGCGTCCATCTTTTGG 5169026 Query 22558 CTaaaaaaaCGTGCAATTATGCCGGGTCTAACGTTTTCAAATGAGTTAATTAGCCGAGAT 22617 | || || |||| | | ||||| || | |||| ||||| ||| | || || || ||| Sbjct 5169027 ATGAAGAAGCGTGGATTAATGCCTGGCTTGGCGTTCTCAAACGAGCTCATCAGTCGTGAT 5169086 Query 22618 GAGGGTCTTCATACCGATTTTGCGTG 22643 |||||| | |||||||| || || || Sbjct 5169087 GAGGGTATGCATACCGACTTCGCCTG 5169112 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1303353082324242