Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lentinula_20edodes_20[genbank_20GCA_5F001562095.1_202016-02-16] 31 sequences; 46,106,741 total letters Query= NC_008168.1 Length=104710 Score E Sequences producing significant alignments: (Bits) Value seq18 140 2e-28 seq1 132 3e-26 seq8 122 6e-23 seq26 102 5e-17 seq2 95.1 8e-15 >seq18 Length=176572 Score = 140 bits (154), Expect = 2e-28 Identities = 88/95 (93%), Gaps = 5/95 (5%) Strand=Plus/Plus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 |||||||||||||||||||||||||||||||||||||||||||| || |||||||| Sbjct 16017 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGT 16076 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 |||||| |||||||||||||||||||||||||||| Sbjct 16077 TAATCCATTCATGCGCGTCACTAATTAGATGACGA 16111 Score = 140 bits (154), Expect = 2e-28 Identities = 88/95 (93%), Gaps = 5/95 (5%) Strand=Plus/Minus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 |||||||||||||||||||||||||||||||||||||||||||| || |||||||| Sbjct 70890 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGT 70831 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 |||||| |||||||||||||||||||||||||||| Sbjct 70830 TAATCCATTCATGCGCGTCACTAATTAGATGACGA 70796 Score = 140 bits (154), Expect = 2e-28 Identities = 88/95 (93%), Gaps = 5/95 (5%) Strand=Plus/Minus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 |||||||||||||||||||||||||||||||||||||||||||| || |||||||| Sbjct 78908 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGT 78849 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 |||||| |||||||||||||||||||||||||||| Sbjct 78848 TAATCCATTCATGCGCGTCACTAATTAGATGACGA 78814 Score = 127 bits (140), Expect = 1e-24 Identities = 88/97 (91%), Gaps = 7/97 (7%) Strand=Plus/Minus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 |||||||||||||||||||||||||||||||||||||||||||| || |||||||| Sbjct 52934 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGT 52875 Query 25957 -TAATCC-TTTCATGCGCGTCACTAATTAGATGACGA 25991 | |||| ||||||||||||||||||||||||||||| Sbjct 52874 GTTATCCATTTCATGCGCGTCACTAATTAGATGACGA 52838 Score = 104 bits (114), Expect = 2e-17 Identities = 69/77 (90%), Gaps = 0/77 (0%) Strand=Plus/Minus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006 |||||| | |||||||||||||| |||||||||||||||||||||||||||||||||| | Sbjct 50952 CTCTCTTTCCAAAGTTCTTTTCATCTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCTC 50893 Query 20007 GGTAATATTTAGCCTTA 20023 |||||||||| ||| Sbjct 50892 CCCAATATTTAGCTTTA 50876 Score = 102 bits (112), Expect = 5e-17 Identities = 69/76 (91%), Gaps = 1/76 (1%) Strand=Plus/Minus Query 19949 CTCTCTTC-AAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGCG 20007 |||||||| ||||||||||||| |||||||||||||||||||||||||||||||||| | Sbjct 31913 CTCTCTTCCAAAGTTCTTTTCATCTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCTCC 31854 Query 20008 GTAATATTTAGCCTTA 20023 |||||||||| ||| Sbjct 31853 CCAATATTTAGCTTTA 31838 Score = 102 bits (112), Expect = 5e-17 Identities = 69/76 (91%), Gaps = 1/76 (1%) Strand=Plus/Minus Query 19949 CTCTCTTC-AAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGCG 20007 |||||||| ||||||||||||| |||||||||||||||||||||||||||||||||| | Sbjct 41643 CTCTCTTCCAAAGTTCTTTTCATCTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCTCC 41584 Query 20008 GTAATATTTAGCCTTA 20023 |||||||||| ||| Sbjct 41583 CCAATATTTAGCTTTA 41568 Score = 89.7 bits (98), Expect = 3e-13 Identities = 80/97 (82%), Gaps = 15/97 (15%) Strand=Plus/Minus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCG- 25955 |||||||||||||||||||||||||||||||||||||||||||| || || |||| Sbjct 33906 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAA-CTCGT 33848 Query 25956 TTAATCCTTTCATGCGCGTCACTAA-TTAGATGACGA 25991 ||||||| ||||| ||||| ||||||||||| Sbjct 33847 TTAATCCATTCAT-------ACTAATTTAGATGACGA 33818 Score = 89.7 bits (98), Expect = 3e-13 Identities = 80/97 (82%), Gaps = 15/97 (15%) Strand=Plus/Minus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCG- 25955 |||||||||||||||||||||||||||||||||||||||||||| || || |||| Sbjct 43636 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAA-CTCGT 43578 Query 25956 TTAATCCTTTCATGCGCGTCACTAA-TTAGATGACGA 25991 ||||||| ||||| ||||| ||||||||||| Sbjct 43577 TTAATCCATTCAT-------ACTAATTTAGATGACGA 43548 >seq1 Length=5311644 Score = 132 bits (146), Expect = 3e-26 Identities = 85/93 (91%), Gaps = 5/93 (5%) Strand=Plus/Plus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 |||||||||||||||||||||||||||||||||||||||||||| || |||||||| Sbjct 4330779 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGT 4330838 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGAC 25989 |||||| ||||||||| |||||||||||||||| Sbjct 4330839 TAATCCATTCATGCGCATCACTAATTAGATGAC 4330871 >seq8 Length=805900 Score = 122 bits (134), Expect = 6e-23 Identities = 258/381 (68%), Gaps = 17/381 (4%) Strand=Plus/Plus Query 6232 CCAAGGTCGAGGGTAAGGGAAACGGTATTAAAACCGTCATTGTCAACATGCCTGAAGTCG 6291 |||| | || || || || || || ||||||||||||||| |||||| | || || | Sbjct 389727 CCAAAATTGAAGGCAAAGGGAATGGCATTAAAACCGTCATTCCTAACATGGCCGACGTAG 389786 Query 6292 CTAAGGCGCTCGGACGCCCTGCCACCTACCCGACGAAATATTTCGGGTGCGAACTTGGCG 6351 || ||| | | || ||| || ||| || || |||| ||||| ||||||||||| | Sbjct 389787 CTCGTGCGTTGAGCCGTCCT-CCTGCTATCCTACCAAATTCTTCGGCTGCGAACTTGGTG 389845 Query 6352 CTCAGACGCAGTTTGATCACAAAAACGAGCGCTTCATCGTTAACGGATCGCATAACTCTG 6411 | ||||| ||||||| | || || || |||| |||||| ||||| | ||| | || Sbjct 389846 CGCAGACCTCGTTTGATGAAAAGAATGAACGCTACATCGTCAACGGCGCTCATGATGCTA 389905 Query 6412 CCAAGCTGCAGGACTTACTTGACGGCTTTATTCGCAAGTTTGTGCTGTGTCGGGAATGCG 6471 | || | ||| || ||||||||||| ||| ||| || || | || | ||| Sbjct 389906 ACCGCCTTCGGGAATTGCTTGACGGCTTCATTGACAAATTCGTCTTATGCAAGTCTTGCA 389965 Query 6472 ATAACCCGGAGACCGAGCTTATTGT-GTCTACCAAG-----AGAAACACCATCTCTCAGG 6525 | |||||||| || ||||| || | | | |||| || | |||| | | Sbjct 389966 AGAACCCGGAAACGGAGCTCATCATCCTAAAACAAGGTCGTAGCGAGGACATCATCCGCG 390025 Query 6526 GCTGCAAAGCGTGCGGTTACCATGGCAAGCTGGATTTATCA-----CACAAACTCAACAC 6580 ||||||||| |||||| | | ||| |||| | || |||||||||| ||| Sbjct 390026 ACTGCAAAGCCTGCGGTGAAC---GCA--CTGGCGTCGACATGCGTCACAAACTCACCAC 390080 Query 6581 CTTCATACTGAAGAATCCTCC 6601 |||||| ||||||||||||| Sbjct 390081 ATTCATATTGAAGAATCCTCC 390101 >seq26 Length=3662990 Score = 102 bits (112), Expect = 5e-17 Identities = 69/76 (91%), Gaps = 1/76 (1%) Strand=Plus/Minus Query 19949 CTCTCTTC-AAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGCG 20007 |||||||| ||||||||||||| |||||||||||||||||||||||||||||||||| | Sbjct 942875 CTCTCTTCCAAAGTTCTTTTCATCTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCTCC 942816 Query 20008 GTAATATTTAGCCTTA 20023 |||||||||| ||| Sbjct 942815 CCAATATTTAGCTTTA 942800 Score = 89.7 bits (98), Expect = 3e-13 Identities = 80/97 (82%), Gaps = 15/97 (15%) Strand=Plus/Minus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCG- 25955 |||||||||||||||||||||||||||||||||||||||||||| || || |||| Sbjct 944868 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAA-CTCGT 944810 Query 25956 TTAATCCTTTCATGCGCGTCACTAA-TTAGATGACGA 25991 ||||||| ||||| ||||| ||||||||||| Sbjct 944809 TTAATCCATTCAT-------ACTAATTTAGATGACGA 944780 >seq2 Length=1585523 Score = 95.1 bits (104), Expect = 8e-15 Identities = 149/211 (71%), Gaps = 2/211 (1%) Strand=Plus/Minus Query 38108 CACCAA-ATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGACAAAACACGTTCGTCGT 38166 |||||| |||||| || ||| || ||||| || || ||||| | ||| | || | Sbjct 1022618 CACCAAGATGAAGGGTAGACTCTTTCTGAATGTTATAGTCAGAAAGCGTACGACCATCCT 1022559 Query 38167 CTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGGACGCCTTCTTTGTCCA 38226 | || || ||||| ||||| || | || ||||| |||| || | ||||||||||||| Sbjct 1022558 CCAACTGCTTTCCAGCAAAGATCAAACGCTGTTGGTCGGGAGGAATGCCTTCTTTGTCCT 1022499 Query 38227 TAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACTTCTAATGTAATAGTTT 38286 ||| ||| ||| ||||| | || ||| || | || ||||| | || || || | Sbjct 1022498 GAATCTTTGCCTTGACATTGTCGATAGTGTCAGAAGACTCGACTTCAAGAGTGATCGTCT 1022439 Query 38287 TACCCGTCAAGGTT-TTCACGAATATCTGCA 38316 | || ||||| ||| ||||| || ||||||| Sbjct 1022438 TTCCGGTCAATGTTCTTCACAAAGATCTGCA 1022408 Score = 84.2 bits (92), Expect = 1e-11 Identities = 148/212 (70%), Gaps = 3/212 (1%) Strand=Plus/Plus Query 38108 CACCAAA-TGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGACAAAACACGTTCGTCGT 38166 |||||| |||||||| |||||| ||||||||||||||||| | || | || | Sbjct 171631 CACCAAGGTGAAGAGTCGACTCCTTCTGAATATTGTAATCAGAAAGCGTGCGACCATCCT 171690 Query 38167 CTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGGACGCCTTCTTTGTCCA 38226 | || || || || ||||| || || |||||||| || | || | ||||| |||||| Sbjct 171691 CCAACTGCTTGCCAGCAAAAATGAGACGTTGTTGGTCAGGCGGAATACCTTCCTTGTCCT 171750 Query 38227 TAATTTTTTGCTTCACATTCTGGACAGTATCTCCAC-TTTCAACTTCTAATGTAATAGTT 38285 || || ||| ||||| | | || || | || ||||| || | ||||| || Sbjct 171751 GGATCTTCGCCTTTACATTGTCAATGGTGTC-CGACGACTCAACCTCCAGAGTAATCGTC 171809 Query 38286 TTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317 || || || | ||| || ||||| |||||||| Sbjct 171810 TTTCCTGTGAGGGTCTTGACGAAGATCTGCAT 171841 Score = 84.2 bits (92), Expect = 1e-11 Identities = 141/204 (69%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 38115 TGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGACAAAACACGTTCGTCGTCTAATTGT 38174 ||||| || |||||| ||||| ||||| ||||| | ||| | || || | || Sbjct 172095 TGAAGGGTTGACTCCTTCTGAATGTTGTAGTCAGAAAGGGTGCGTCCATCTTCGAGCTGC 172154 Query 38175 TTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGGACGCCTTCTTTGTCCATAATTTTT 38234 || ||||| || ||||| ||||||||||||| || | ||| || || ||| || || Sbjct 172155 TTGCCGGCGAAGATTAGTCGTTGTTGATCGGGAGGAATGCCCTCCTTATCCTGTATCTTG 172214 Query 38235 TGCTTCACATTCTGGACAGTATCTCCACTTTCAACTTCTAATGTAATAGTTTTACCCGTC 38294 |||||| || | || || ||| | || || || || || || ||||| ||||| Sbjct 172215 GCCTTCACGTTGTCGATCGTGTCTGAAGACTCGACCTCCAAAGTGATCGTTTTGCCCGTG 172274 Query 38295 AAGGTTTTCACGAATATCTGCATG 38318 | ||| || || || || |||||| Sbjct 172275 AGGGTCTTAACAAAGATTTGCATG 172298 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 334947073452761