Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lentinula_20edodes_20[genbank_20GCA_5F001562095.1_202016-02-16] 31 sequences; 46,106,741 total letters Query= NC_008291.1 Length=198050 Score E Sequences producing significant alignments: (Bits) Value seq29 199 5e-46 seq31 120 4e-22 seq1 82.4 1e-10 >seq29 Length=5849119 Score = 199 bits (220), Expect = 5e-46 Identities = 389/568 (68%), Gaps = 9/568 (2%) Strand=Plus/Minus Query 32661 CATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGT 32720 || ||||| ||| || | |||||| || | ||| || | ||||| || |||| | Sbjct 5169112 CAGGCGAAGTCGGTATGCATACCCTCATCACGACTGATGAGCTCGTTTGAGAACGCCAAG 5169053 Query 32721 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAA 32780 || ||||||| |||||||| || | |||||| |||||||| || || ||||| |||||| Sbjct 5169052 CCAGGCATTAATCCACGCTTCTTCATCCAAAAGATGGACGCGAAGGAGCCAGAGAAGAAA 5168993 Query 32781 ATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCC-ATAACCG-GCGCT-GTCATGT 32837 || ||||| || || |||||||| | || | ||| || | ||||| | | | |||| Sbjct 5168992 ATGCCTTCAACAGCAGCAAAGGCTACGAGACGCTCGCCGAAAACCGAGTGTTCGTCACTG 5168933 Query 32838 ATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTATAGCATTA 32897 ||||| | ||||||| |||||||| || | ||||| || ||||| ||||||| | Sbjct 5168932 ATCCAGTGCAGAGCCCACTCGGCCTTGCGCTTGATGCAAGGAATAGTCTCGATAGCATCA 5168873 Query 32898 AAGAGATAGtttttttCATTACTATCTTTAACATATGTATCAATCAAAAGACTATACATT 32957 || || | | ||| | ||||| | ||||| || || | |||| || | Sbjct 5168872 AAAAGGAAATCACGTTCGACAGGGTCTTTGATGTATGTGTCGATGAGAAGAGAGTAAGTC 5168813 Query 32958 TCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAGCATCTAGCCTCGGTAATC 33017 || || |||||||| || || || || || ||||||||||| | ||||| | | | Sbjct 5168812 TCGGAGTGAATGTTCTCCATCATAATCTGGAACCCGTAGAAGCAACGTGCCTCAGCGACC 5168753 Query 33018 TGTACTTCTGTACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCGTCACTGGCTGCA 33077 |||||||| | | || ||||| | ||| || || || || || ||| ||| ||| Sbjct 5168752 TGTACTTCGTTCGAGAAGCGTTCGAGAAGATTCTCGTTGACAATGCCATCAGAGGCGGCA 5168693 Query 33078 AAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTT----AGTTTATTCCA 33133 || ||||| | ||| | || || || |||| ||| || | || ||||| Sbjct 5168692 AAGAACGCGAGGACACGGGAGATGAAGAATCGTTCG-CTGTCATTCAGGCGGTTGTTCCA 5168634 Query 33134 ATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTT 33193 |||| | ||||| |||| ||||| |||||| | ||||| || || ||||| ||||| Sbjct 5168633 GTCATGAAGGTCTTTTGATAAATCCATCTCTTCCGCAGTCCAGAAAGAGGCCTCGGCCTT 5168574 Query 33194 TTTATACATATTCCAGATGTCATGATAT 33221 || ||||| | ||| || | || |||| Sbjct 5168573 CTTGTACATTTGCCATATCTGAT-ATAT 5168547 >seq31 Length=1678028 Score = 120 bits (132), Expect = 4e-22 Identities = 378/572 (66%), Gaps = 24/572 (4%) Strand=Plus/Plus Query 32661 CATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGT 32720 ||||| || ||| ||| | || ||||| | ||| || | |||||| ||||| || | Sbjct 618616 CATGCAAAGTCGGTGTGCATTCCTTCGTCACGACTGATAAGTTCGTTTGAAAAGGTCAAC 618675 Query 32721 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAA 32780 || |||| || ||||| ||||| | |||||||||| |||| || ||||| || || ||| Sbjct 618676 CCAGGCAATAATCCACGTTTTTTGATCCAAAATATGCACGCGAAAGATCCGGAGAAAAAA 618735 Query 32781 ATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCA----TAACCGGCGCTGTCATG 32836 |||||||| | || | || |||| |||| || || |||| | | ||| | Sbjct 618736 ATTCCTTCGATGGCTGAGAATGCAACGAGTCGTTCCGCAAAAGTAACTTGATC-GTCTTC 618794 Query 32837 TATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTATAGCA-T 32895 ||||| || | ||||| | || || | ||| | ||||| || || || |||| | | Sbjct 618795 GATCCATCTTAGTGCCCATGCCGCTTTTTGTTTAATGCAAGGAATCGTTTCGATAGAACT 618854 Query 32896 TAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCAATCA--AAAGACTATA 32953 || ||| | | || | | ||||| | ||| || | ||||| ||||| ||| Sbjct 618855 GAACAAGAATGATCGTTCGAAT-GGATCTTGGATATACGTTTGAATCAGCAAAGA--ATA 618911 Query 32954 CATTTCCGAATGAATGTTTTCAATGGCCATT---TGAAATCCGTAGAAGCATCTAGCCTC 33010 |||| ||||| |||||||| || |||| || ||||| |||||| ||| |||||| Sbjct 618912 AGTTTCTGAATGGATGTTTTCCAT---CATTGACTGGAATCCATAGAAGGATCGAGCCTC 618968 Query 33011 GGTAATCTGTACTTCTGTACAAAATCGTTCTGCT-AAATTTTCATTCACTATTCCGTCAC 33069 | | ||| | ||| || | || | | | | || ||||| || || || ||||| Sbjct 618969 AGCGACCTGAATTTCACTAGAGAAGTG-ACGGATCAAGTTTTCGTTTACAATACCGTCGG 619027 Query 33070 TGGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTG-GT--GTTAGTT 33126 || || ||||| || | ||| | | ||| | |||| || || | | | Sbjct 619028 ACGCAGCGAAAAATGCTAGCACACGAGCCGTGAAAAAGCGCTCGTTTGCGTTCATGCGGT 619087 Query 33127 TATTCCAATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCT 33186 | ||||| || | | ||| || || | || | ||||||| ||||| || || |||| Sbjct 619088 TGTTCCAGTCGTGCAAATCGTTTGAAAGGTCTATTTCTTCCGTAGTCCAGAAGGAAGCCT 619147 Query 33187 CTGCCTTTTTATACATATTCCAGA--TGTCAT 33216 | || ||||| ||| | ||||| |||||| Sbjct 619148 CAGCTTTTTTGTACCTTCGCCAGATCTGTCAT 619179 Score = 87.8 bits (96), Expect = 2e-12 Identities = 129/180 (72%), Gaps = 2/180 (1%) Strand=Plus/Plus Query 32385 ACACGTTTTTCGAAAAAATTAGTTTTACCTTCTAATGATATATTTTCCATGAAATCGAAT 32444 || || ||||| |||||||| ||||| ||||| | ||||| | ||||||||||| || Sbjct 618286 ACTCGCTTTTCAAAAAAATTTGTTTTTCCTTCCAGAGATATCATGTCCATGAAATCAAAA 618345 Query 32445 GGATTGGTAACATTATAAAtttttttAAATCCCAA-TTCAGAAATCAATCTATCTGCGAC 32503 || || | || || || | ||| || |||||| | || || || || ||| || | Sbjct 618346 GGGTTTCTGACGTTGTATAATTTGTT-GTTCCCAAGTGCATTAAGCAGTCCATCCGCAAT 618404 Query 32504 AAATTCTATATATGTTTTCATCATTTCACAATTCATTCCTATAAGTTTAACTGGAAGAGC 32563 || || || ||| | ||||| ||| ||||||||||||| | | |||||||| ||| Sbjct 618405 GAACTCGATGTATATGCACATCAGCTCATAATTCATTCCTATCAAGTCAACTGGAATAGC 618464 >seq1 Length=5311644 Score = 82.4 bits (90), Expect = 1e-10 Identities = 132/185 (71%), Gaps = 6/185 (3%) Strand=Plus/Minus Query 61886 AGATAGTACATTCCCGTTTTTAGACCGAGACTCCATCCGTAAAAATGCATACTCGTTAGT 61945 ||||| ||||| || ||||| | || |||||||| |||||||||||||| ||||| Sbjct 5027693 AGATAATACATCCCGGTTTTCAAGCCCTTTCTCCATCCATAAAAATGCATACTTGTTAGC 5027634 Query 61946 TTGGAATAACTC--GGATCTGCTATATGGATATTCATAGAT-TGACTTTGATCGATGAAG 62002 | || || ||| || | ||| ||||||| || | |||||||| ||| || Sbjct 5027633 T--GACCCACAGATGGAGAGGCAAGATGAATATTCA-AGCTCTGACTTTGGCAGATAAAC 5027577 Query 62003 GCTCCCCTGTCTGCAGCCATTTTTATAATCGTCTTTTGTGGAATTTCCCAAATAGTTTTA 62062 || || | || | || | | | |||||| ||||| ||||||||||||| |||||| Sbjct 5027576 GCGCCACGATCCACGGCAAAATCCAAAATCGTTTTTTGAGGAATTTCCCAAACCGTTTTA 5027517 Query 62063 TAAAC 62067 ||||| Sbjct 5027516 TAAAC 5027512 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 633631754467600