Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lentinula_20edodes_20[genbank_20GCA_5F001562095.1_202016-02-16] 31 sequences; 46,106,741 total letters Query= NC_008293.1 Length=135454 Score E Sequences producing significant alignments: (Bits) Value seq2 136 3e-27 seq16 95.1 1e-14 >seq2 Length=1585523 Score = 136 bits (150), Expect = 3e-27 Identities = 158/213 (74%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 24998 AATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTC 25057 |||||| || ||||| |||||||||||||| || ||||||| | || || |||||||| Sbjct 1022180 AATGCAGATCTTTGTCAAGACTTTGACCGGAAAGACCATCACCTTGGAGGTCGAGTCGTC 1022239 Query 25058 TGACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCA 25117 ||| || || || ||||| ||| ||| || || || || || || |||||||| Sbjct 1022240 TGATACCATTGACAATGTGAAGGCAAAGATCCAGGATAAGGAGGGTATCCCTCCTGACCA 1022299 Query 25118 ACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAA 25177 ||| || |||| ||||| || || || ||||||||| |||||| | ||||| || Sbjct 1022300 ACAACGTCTTATCTTTGCTGGAAAGCAGCTAGAAGATGGCCGCACTCTTTCGGATTATAA 1022359 Query 25178 TATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 ||| ||||||||||| || || ||| | || || Sbjct 1022360 TATCCAAAAAGAATCGACTCTTCATCTTGTTCT 1022392 Score = 129 bits (142), Expect = 5e-25 Identities = 167/229 (73%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || || || ||||| | || || || | ||||| | || || ||||||||| Sbjct 172069 ATGCAGATCTTCGTCAAGACACTCACGGGAAAGACGATCACTCTTGAGGTTGAGTCGTCT 172010 Query 25059 GACACTATCGAGTCACTG--AAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACC 25116 |||||||| || || || ||| |||||| ||||| ||||| ||||| ||||||| Sbjct 172009 GACACTATTGA--CAATGTTAAGGCGAAAATCCAGGACAAGGAAGGTATTCCGCCTGACC 171952 Query 25117 AACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACA 25176 |||| || | |||||||| ||||| || || || |||| |||||| | ||||||| Sbjct 171951 AACAACGTCTCATTTTTGCTGGCAAGCAGTTGGAGGATGGTCGCACGCTTTCTGATTACA 171892 Query 25177 ATATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGG 25225 ||||||| ||||| || || || || | || || | || ||||||| Sbjct 171891 ATATTCAGAAAGAGTCAACCCTCCACCTTGTCCTTCGTCTTCGAGGAGG 171843 Score = 118 bits (130), Expect = 9e-22 Identities = 153/207 (74%), Gaps = 7/207 (3%) Strand=Plus/Plus Query 25000 TGCAAATATTTGTAAAGA-CTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 |||| || ||||| |||| | |||||||| || | ||||| | ||||| ||||| ||| Sbjct 1022408 TGCAGATCTTTGTGAAGAACATTGACCGGAAAGACGATCACTCTTGAAGTCGAGTCTTCT 1022467 Query 25059 GACACTATCGAGTCACTG---AAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGAC 25115 ||||||||||| || || | ||||| | ||| ||||||||||| ||||| || ||| Sbjct 1022468 GACACTATCGA--CAATGTCAAGGCAAAGATTCA-GGACAAAGAAGGCATTCCTCCCGAC 1022524 Query 25116 CAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTAC 25175 |||||||| | || ||||| || || || || || |||| ||| || | || || Sbjct 1022525 CAACAGCGTTTGATCTTTGCTGGAAAGCAGTTGGAGGATGGTCGTACGCTTTCTGACTAT 1022584 Query 25176 AATATTCAAAAAGAATCCACGCTACAT 25202 || ||||| ||||| || || || ||| Sbjct 1022585 AACATTCAGAAAGAGTCTACCCTTCAT 1022611 Score = 104 bits (114), Expect = 2e-17 Identities = 147/205 (72%), Gaps = 4/205 (2%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || || || ||||| | || || || | || || | || || |||||||| Sbjct 171841 ATGCAGATCTTCGTCAAGACCCTCACAGGAAAGACGATTACTCTGGAGGTTGAGTCGTCG 171782 Query 25059 GACACTATCGAGTCACTG--AAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACC 25116 ||||| || || || || ||| || ||| ||||| ||||| ||||| ||||||| Sbjct 171781 GACACCATTGA--CAATGTAAAGGCGAAGATCCAGGACAAGGAAGGTATTCCGCCTGACC 171724 Query 25117 AACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACA 25176 |||| || | |||||||| ||||| || || || |||| |||||| | ||||||| Sbjct 171723 AACAACGTCTCATTTTTGCTGGCAAGCAGTTGGAGGATGGTCGCACGCTTTCTGATTACA 171664 Query 25177 ATATTCAAAAAGAATCCACGCTACA 25201 ||||||| || || || || || || Sbjct 171663 ATATTCAGAAGGAGTCGACTCTTCA 171639 >seq16 Length=279175 Score = 95.1 bits (104), Expect = 1e-14 Identities = 86/107 (80%), Gaps = 1/107 (1%) Strand=Plus/Minus Query 25104 ATTCCACCTGACCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACT 25163 ||||| ||||| |||||||| | ||||| ||||| |||||| | || |||| || ||| Sbjct 135833 ATTCC-CCTGATCAACAGCGACTCATTTTCGCCGGAAAACAACTTGAGGATGGACGTACT 135775 Query 25164 GTGGGCGATTACAATATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 || | |||||||| ||||| ||||||||||| || || |||||||| Sbjct 135774 CTGAGTGATTACAACATTCAGAAAGAATCCACCCTTCACTTAGTGCT 135728 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433327836283265