Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lentinula_20edodes_20[genbank_20GCA_5F001562095.1_202016-02-16] 31 sequences; 46,106,741 total letters Query= NC_008518.1 Length=174059 Score E Sequences producing significant alignments: (Bits) Value seq23 208 8e-49 seq9 167 3e-36 seq29 165 9e-36 seq31 147 2e-30 >seq23 Length=3600692 Score = 208 bits (230), Expect = 8e-49 Identities = 389/561 (69%), Gaps = 13/561 (2%) Strand=Plus/Plus Query 93092 CACGCAAAGTCGGTATGTAAACCTTCGTCTCGTGATATCAACTCATTGCTGAAT--GTTA 93149 ||||| || ||||||||||||||||| ||||| || | ||| || ||||| |||| Sbjct 3498579 CACGCGAAATCGGTATGTAAACCTTCATCTCGGCTGATGAGCTCGTT--TGAATAAGTTA 3498636 Query 93150 AACCTGGTAACAGTCCTCGTTTCTTGAGCCAAAATATTGAAGCAAAACTACCAGaaaaaa 93209 || || | ||| || || ||||| | ||| || || ||||| || |||||||||| Sbjct 3498637 GGCCAGGCATCAGGCCGCGCTTCTTTAACCAGAAAATGGAAGCGAACGACCCAGAAAAAA 3498696 Query 93210 aTATACCTTCCACGGCTGCAAATGCCACAATACGTTCGGCAAAATTTGCGGAATTACTGC 93269 | || || || || || || |||||||| | | || |||||| | || || | | Sbjct 3498697 AGATTCCCTCGACAGCAGCGAATGCCACCAATCTCTCTGCAAAAGT-GCTTCGTTTGT-C 3498754 Query 93270 TGAT--CCATTTTAAAGCCCAATCGGCTTTTTTCTTAATACAAGGTAGTGTTTCGATAGC 93327 ||| |||||| | ||||| |||||||| ||| || || |||| |||||| || || Sbjct 3498755 AGATATCCATTTGAGGGCCCAGTCGGCTTTGCGCTTGATGCACGGTATTGTTTCTATTGC 3498814 Query 93328 GTTAAATAGGTAATCTCGCTCGTCCGAATCTCGTATGTATGTATCGATTAACAGAGAATA 93387 || || || || | || | | ||| | |||||||||||| | |||||| || Sbjct 3498815 GTCGAAGAGATATGCGCGTTGATTAAGATCCTTGACGTATGTATCGATAAGCAGAGAGTA 3498874 Query 93388 CATTTCAGAATGGACATTCTCCATTGCAATTTGGAATCCGTAGAAACATCTAGCTTCCG- 93446 |||||||||| || || ||||| |||||||| || || || | | || || | Sbjct 3498875 AGTTTCAGAATGAACGTTTTCCATCATTATTTGGAACCCATAAAAGTAGCGCGCCTCAGC 3498934 Query 93447 TGATCTGCACTTCTTGAGAAAATCTCTCTACGAGATTTTCATTGACTATACCATCGGATG 93506 || | |||||||| | ||||| | ||| | |||||||| || || ||||| || || | Sbjct 3498935 TGCT-TGCACTTCGTTTGAAAAGCGCTCCAACAGATTTTCGTTCACGATACCGTCAGAGG 3498993 Query 93507 CTGCaaaaaaaGCCAATATATGCTTTATAAAATGTTTCTCATCA-TCTTTAA--GCTTAT 93563 | ||||| || || | | || | || ||||| ||| ||| | ||||| ||| | Sbjct 3498994 CGGCAAAGAATGCAAGGACGTGGGTGATGAAATGACGCTCGTCATTGTTTAATCGCTCGT 3499053 Query 93564 CCCAATCGGATAGATCTTTTGAAAGATCGACTTCTTCGACAGTCCAAAACGATGCTTCTG 93623 ||| ||| ||||| | | || || | ||||| ||||| ||||||||||||| Sbjct 3499054 TCCAGTCGACAAGATCATGAGTGAGGTCAATCTCTTCCGAGGTCCAGAACGATGCTTCTG 3499113 Query 93624 CTTTTTTGTACATATCCCATA 93644 |||| |||||||| | ||||| Sbjct 3499114 CTTTCTTGTACATCTGCCATA 3499134 >seq9 Length=652519 Score = 167 bits (184), Expect = 3e-36 Identities = 383/562 (68%), Gaps = 21/562 (4%) Strand=Plus/Minus Query 93088 TAAG-CACGCAAAGTCGGTATGTAAACCTTCGTCTCGTGAT-ATCAACTCATTGCTGAAT 93145 |||| || ||||| || ||||| | ||||| || | | | || | ||||| ||| Sbjct 464846 TAAGACATGCAAATTCAGTATGCATTCCTTCATCGCCGGCTGATGAGTTCATTTGAGAAC 464787 Query 93146 GTTAAACCTGGTAACAGTCCTCGTTTCTTGAGCCAAAATATTGAAGCAAAACTAC-CAGa 93204 || ||||| || | || ||||| ||||| | ||||||||| | ||||| | || |||| Sbjct 464786 GTCAAACCCGGCATCAACCCTCGCTTCTTCATCCAAAATATGCAGGCAAA-CGACGCAGA 464728 Query 93205 aaaaaaTATACCTTCCACGGCTGCAAATGCCACAATACGTTCGGCAAAATTTGCGGA--- 93261 ||||||||| ||||| | ||||||||||| || | ||| || ||||| || | | Sbjct 464727 AAAAAATATGCCTTCGATCGCTGCAAATGCTACCAAACGCTCTGCAAA---TGTGAATCT 464671 Query 93262 ATTACTGCTG-ATCCATTTTAAAGCCCAATCGGCTTTTTTCTTAATACAAGGTAGTGTTT 93320 |||| | || ||||||| | ||||| | |||||| | ||||| || || | |||| Sbjct 464670 ATTA-TCTTGAATCCATTGAAGCGCCCATTTTGCTTTTCTTTTAATGCACGGAATAGTTT 464612 Query 93321 CGATAGCGTTAAATAGGTAATC--TCGCTCGTCCGAATCTCGTATGTATGTATCGATTAA 93378 | |||| ||| |||| ||| ||||| | |||||| || || || | || | Sbjct 464611 CAATAGAGTTGAATA--ACATCGAACGCTCTGGAGCATCTCGAATATAGGTTTGAATAAG 464554 Query 93379 CAGAGAATACATTTCAGAATGGACATTCTCCATTGCAATTTGGAATCCGTAGAAACATCT 93438 || ||| || |||||||||| | ||| ||||| ||| ||||| || |||||||| | Sbjct 464553 CAAAGAGTAGGTTTCAGAATGAATATTTTCCATCATAATCTGGAAACCATAGAAACACCG 464494 Query 93439 AGCTTCCGTGATCTGCACTTC-TTGAGAAAATCTCTCTACGAGATTTTCATTGACTATAC 93497 || |||| | ||| | ||| ||| ||||| | | |||||| || || || |||| Sbjct 464493 TGCCTCCGGCACCTGTATTTCGTTGGAAAAATGGC-GAATGAGATTCTCGTTTACAATAC 464435 Query 93498 CATCGGATGCTGCaaaaaaaGCCAATATATGCTTTATAAAATGTTTCTCATCATCTTTAA 93557 |||| || || ||||| || || | | | | || ||| |||| | | || | Sbjct 464434 CATCCGACGCAGCAAAGAACGCGAGGACGCGAGACAGGAAGAATTTTTCATTAACGTTCA 464375 Query 93558 G---CTTATCCCAATCGGATAGATCTTTTGAAAGATCGACTTCTTCGACAGTCCAAAACG 93614 | || | ||| |||| | ||| |||||||||| | ||||| ||||| || | Sbjct 464374 GTTTGTTGTTCCAGTCGGTGATATCACTTGAAAGATCAATCTCTTCCGATGTCCAGAATG 464315 Query 93615 ATGCTTCTGCTTTTTTGTACAT 93636 | | | |||||||||||||| Sbjct 464314 ACGACTGAGCTTTTTTGTACAT 464293 >seq29 Length=5849119 Score = 165 bits (182), Expect = 9e-36 Identities = 375/560 (67%), Gaps = 7/560 (1%) Strand=Plus/Minus Query 93091 GCACGCAAAGTCGGTATGTAAACCTTCGTCTCGTGATATCAACTCATTGCTGAATGTTAA 93150 ||| || ||||||||||| | ||| || || || || | ||| || ||| | || Sbjct 5169113 GCAGGCGAAGTCGGTATGCATACCCTCATCACGACTGATGAGCTCGTTTGAGAACGCCAA 5169054 Query 93151 ACCTGGTAACAGTCCTCGTTTCTTGAGCCAAAATATTGAAGCAAAACTACCAGaaaaaaa 93210 || || | | ||| || ||||| | |||||| || || || || ||||| || || Sbjct 5169053 GCCAGGCATTAATCCACGCTTCTTCATCCAAAAGATGGACGCGAAGGAGCCAGAGAAGAA 5168994 Query 93211 TATACCTTCCACGGCTGCAAATGCCACAATACGTTCGGCAAAATTTGCGGAATTACTGCT 93270 || ||||| || || ||||| || || | ||| ||| | ||| | | | || Sbjct 5168993 AATGCCTTCAACAGCAGCAAAGGCTACGAGACGCTCGCCGAAAACCGAGTGTTCGTCACT 5168934 Query 93271 GATCCATTTTAAAGCCCAATCGGCTTTTTTCTTAATACAAGGTAGTGTTTCGATAGCGTT 93330 |||||| | | |||||| ||||| || ||| || ||||| | || |||||||| | Sbjct 5168933 GATCCAGTGCAGAGCCCACTCGGCCTTGCGCTTGATGCAAGGAATAGTCTCGATAGCATC 5168874 Query 93331 AAATAGGTAATCTCGCTCGTCCGAATCTCGTATGTATGTATCGATTAACAGAGAATACAT 93390 ||| ||| |||| || ||| | | ||| |||||||| ||||| | ||||| || | Sbjct 5168873 AAAAAGGAAATCACGTTCGACAGGGTCTTTGATGTATGTGTCGATGAGAAGAGAGTAAGT 5168814 Query 93391 TTCAGAATGGACATTCTCCATTGCAATTTGGAATCCGTAGAAACATCTAGCTTCCGTGAT 93450 || || || | |||||||| ||| ||||| |||||||| || | || || | || Sbjct 5168813 CTCGGAGTGAATGTTCTCCATCATAATCTGGAACCCGTAGAAGCAACGTGCCTCAGCGAC 5168754 Query 93451 CTGCACTTCTTGAGAAAATCTCTCTACGAGATTTTCATTGACTATACCATCGGATGCTGC 93510 ||| ||||| | || || | || | ||||| || ||||| || ||||| || || || Sbjct 5168753 CTGTACTTCGTTCGAGAAGCGTTCGAGAAGATTCTCGTTGACAATGCCATCAGAGGCGGC 5168694 Query 93511 aaaaaaaGCCAATATATGCTTTAT--AAAATGTTTCTC-ATCATCTTTAAGC--TTATCC 93565 ||| || || | | | | || | ||| ||| | ||| || | || || | | Sbjct 5168693 AAAGAACGCGAGGACACGGGAGATGAAGAATCGTTCGCTGTCA--TTCAGGCGGTTGTTC 5168636 Query 93566 CAATCGGATAGATCTTTTGAAAGATCGACTTCTTCGACAGTCCAAAACGATGCTTCTGCT 93625 || || || |||||||| | ||| | ||||| ||||||| || || || || || Sbjct 5168635 CAGTCATGAAGGTCTTTTGATAAATCCATCTCTTCCGCAGTCCAGAAAGAGGCCTCGGCC 5168576 Query 93626 TTTTTGTACATATCCCATAT 93645 || |||||||| | |||||| Sbjct 5168575 TTCTTGTACATTTGCCATAT 5168556 >seq31 Length=1678028 Score = 147 bits (162), Expect = 2e-30 Identities = 373/556 (67%), Gaps = 21/556 (4%) Strand=Plus/Plus Query 93091 GCACGCAAAGTCGGTATGTAAACCTTCGTCTCG--TGATATCAACTCATTGCTGAATGTT 93148 ||| ||||||||||| || | |||||||| || ||||| | || || || || Sbjct 618615 GCATGCAAAGTCGGTGTGCATTCCTTCGTCACGACTGATA--AGTTCGTTTGAAAAGGTC 618672 Query 93149 AAACCTGGTAACAGTCCTCGTTTCTTGAGCCAAAATATTGAAGCAAAACTACCAGaaaaa 93208 || || || || | ||| ||||| |||| ||||||||| | || ||| || || ||| Sbjct 618673 AACCCAGGCAATAATCCACGTTTTTTGATCCAAAATATGCACGCGAAAGATCCGGAGAAA 618732 Query 93209 aaTATACCTTCCACGGCTGCAAATGCCACAATACGTTCGGCAAAATTTGC-GGAATTACT 93267 || || ||||| | ||||| ||||| || | ||||| |||||| | | || || Sbjct 618733 AAAATTCCTTCGATGGCTGAGAATGCAACGAGTCGTTCCGCAAAAGTAACTTGATCGTCT 618792 Query 93268 GCTGATCCATTTTAAAGCCCAATCGGCTTTTTTCTTAATACAAGGTAGTGTTTCGATAGC 93327 | ||||||| ||| ||||| | ||||||| ||||| ||||| | |||||||||| Sbjct 618793 TC-GATCCATCTTAGTGCCCATGCCGCTTTTTGTTTAATGCAAGGAATCGTTTCGATAGA 618851 Query 93328 GTTAAATAGGTAATCTCGCTCGTCCGAATCTCGTATGTATGTATCGATTAACAGAGAATA 93387 | || | | | ||| ||| | |||| | || || || | || | || |||||| Sbjct 618852 ACTGAACAAGAATGATCGTTCGAATGGATCTTGGATATACGTTTGAATCAGCAAAGAATA 618911 Query 93388 CATTTCAGAATGGACATTCTCCATTGCAAT--TTGGAATCCGTAGAAACATCTAGCTTCC 93445 |||| ||||||| || ||||| || | |||||||| ||||| ||| ||| || Sbjct 618912 AGTTTCTGAATGGATGTTTTCCAT--CATTGACTGGAATCCATAGAAGGATCGAGCCTCA 618969 Query 93446 GTGATCTGCACTTCTTGAGA-AAATCTCTCTACGAGATTTTCATTGACTATACCATCGGA 93504 | || ||| | ||| ||| || | | | || ||||| || || ||||| ||||| Sbjct 618970 GCGACCTGAATTTCACTAGAGAAGTGACGGATCAAG-TTTTCGTTTACAATACCGTCGGA 619028 Query 93505 TGCTGCaaaaaaaGCCAATATATG---CTTTATAAAATGTTTCTCATCATCTTTAA---G 93558 || || ||||| || | | | | | | | ||| | ||| | | || | | Sbjct 619029 CGCAGCGAAAAATGCTAGCACACGAGCCGTGAAAAAGCG---CTCGTTTGCGTTCATGCG 619085 Query 93559 CTTATCCCAATCGGATAGATCTTTTGAAAGATCGACTTCTTCGACAGTCCAAAACGATGC 93618 || | ||| ||| | ||| |||||||| || | |||||| |||||| || || || Sbjct 619086 GTTGTTCCAGTCGTGCAAATCGTTTGAAAGGTCTATTTCTTCCGTAGTCCAGAAGGAAGC 619145 Query 93619 TTCTGCTTTTTTGTAC 93634 || |||||||||||| Sbjct 619146 CTCAGCTTTTTTGTAC 619161 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 556860584216440