Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lentinula_20edodes_20[genbank_20GCA_5F001562095.1_202016-02-16] 31 sequences; 46,106,741 total letters Query= NC_008586.1 Length=131204 Score E Sequences producing significant alignments: (Bits) Value seq2 127 2e-24 >seq2 Length=1585523 Score = 127 bits (140), Expect = 2e-24 Identities = 154/210 (73%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || ||||| || ||||| ||||| || || |||| | || || || | | Sbjct 1022181 ATGCAGATCTTTGTCAAGACTTTGACCGGAAAGACCATCACCTTGGAGGTCGAGTCGTCT 1022240 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 |||||| | ||| || | || ||| || || || ||||||||||| || || || ||| Sbjct 1022241 GATACCATTGACAATGTGAAGGCAAAGATCCAGGATAAGGAGGGTATCCCTCCTGACCAA 1022300 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 ||||||||||| ||||| || || ||| |||| ||| |||||| | || ||||| || Sbjct 1022301 CAACGTCTTATCTTTGCTGGAAAGCAGCTAGAAGATGGCCGCACTCTTTCGGATTATAAT 1022360 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTT 22428 || ||||||||||| || | ||| | ||| Sbjct 1022361 ATCCAAAAAGAATCGACTCTTCATCTTGTT 1022390 Score = 123 bits (136), Expect = 2e-23 Identities = 146/198 (74%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || || || || || | || || || ||| |||||||||| || || | | Sbjct 172069 ATGCAGATCTTCGTCAAGACACTCACGGGAAAGACGATCACTCTTGAGGTTGAGTCGTCT 172010 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || || | ||| || | || ||||| || |||||||| |||||||| || || ||| Sbjct 172009 GACACTATTGACAATGTTAAGGCGAAAATCCAGGACAAGGAAGGTATTCCGCCTGACCAA 171950 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 |||||||| || ||||| ||||| ||||| |||||| ||||| | || |||||||| Sbjct 171949 CAACGTCTCATTTTTGCTGGCAAGCAGTTGGAGGATGGTCGCACGCTTTCTGATTACAAT 171890 Query 22399 ATTCAAAAAGAATCCACC 22416 ||||| ||||| || ||| Sbjct 171889 ATTCAGAAAGAGTCAACC 171872 Score = 122 bits (134), Expect = 7e-23 Identities = 150/204 (74%), Gaps = 1/204 (0%) Strand=Plus/Plus Query 22220 TGCAAATTTTTGTTAA-AACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 |||| || ||||| || ||| || ||||| || ||| ||||||||||||| || | | Sbjct 1022408 TGCAGATCTTTGTGAAGAACATTGACCGGAAAGACGATCACTCTTGAAGTCGAGTCTTCT 1022467 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || || | ||| || |||| ||| ||||| ||||| || || ||||| ||||| ||| Sbjct 1022468 GACACTATCGACAATGTCAAGGCAAAGATTCAGGACAAAGAAGGCATTCCTCCCGACCAA 1022527 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || ||| | || ||||| || || ||||| |||||| || || | || || || ||| Sbjct 1022528 CAGCGTTTGATCTTTGCTGGAAAGCAGTTGGAGGATGGTCGTACGCTTTCTGACTATAAC 1022587 Query 22399 ATTCAAAAAGAATCCACCATACAT 22422 ||||| ||||| || ||| | ||| Sbjct 1022588 ATTCAGAAAGAGTCTACCCTTCAT 1022611 Score = 116 bits (128), Expect = 3e-21 Identities = 162/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 |||||||| |||||||| || | || || |||||| ||||| | || || || | | Sbjct 172297 ATGCAAATCTTTGTTAAGACCCTCACGGGCAAAACGATCACTTTGGAGGTCGAGTCTTCA 172238 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || || | ||| | | || || || || || |||||||| ||||| ||||||||| Sbjct 172237 GACACGATCGACAACGTGAAGGCCAAGATACAGGATAAGGAGGGCATTCCTCCCGATCAA 172178 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 ||||| || || || |||||||| ||| | || ||| |||||| | || || |||||| Sbjct 172177 CAACGACTAATCTTCGCCGGCAAGCAGCTCGAAGATGGACGCACCCTTTCTGACTACAAC 172118 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGG 22445 ||||| || || || ||| | || | ||| | || | || ||||| Sbjct 172117 ATTCAGAAGGAGTCAACCCTTCACCTTGTTCTTCGTCTACGTGGAGG 172071 Score = 107 bits (118), Expect = 2e-18 Identities = 142/197 (72%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || || || || || | || || || ||| | ||||| || || || | | Sbjct 171841 ATGCAGATCTTCGTCAAGACCCTCACAGGAAAGACGATTACTCTGGAGGTTGAGTCGTCG 171782 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || ||| | ||| || | || || || || |||||||| |||||||| || || ||| Sbjct 171781 GACACCATTGACAATGTAAAGGCGAAGATCCAGGACAAGGAAGGTATTCCGCCTGACCAA 171722 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 |||||||| || ||||| ||||| ||||| |||||| ||||| | || |||||||| Sbjct 171721 CAACGTCTCATTTTTGCTGGCAAGCAGTTGGAGGATGGTCGCACGCTTTCTGATTACAAT 171662 Query 22399 ATTCAAAAAGAATCCAC 22415 ||||| || || || || Sbjct 171661 ATTCAGAAGGAGTCGAC 171645 Score = 82.4 bits (90), Expect = 6e-11 Identities = 74/92 (80%), Gaps = 1/92 (1%) Strand=Plus/Minus Query 22324 ATTCCACCCGATCAACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACC 22383 || ||||| || |||||||||||||||||||| || || ||| | || ||| || ||| Sbjct 172419 ATCCCACCTGACCAACAACGTCTTATATTTGCGGGGAAGCAGCTCGAAGATGGTCGAACC 172360 Query 22384 GTCTCCGATTACAACATTCAAAAAGAATCCAC 22415 | ||||| ||||||||||| || |||||||| Sbjct 172359 -TTTCCGACTACAACATTCAGAAGGAATCCAC 172329 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 419727841421515