Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lentinula_20edodes_20[genbank_20GCA_5F001562095.1_202016-02-16] 31 sequences; 46,106,741 total letters Query= NC_009011.2 Length=131331 Score E Sequences producing significant alignments: (Bits) Value seq2 109 5e-19 seq16 102 7e-17 >seq2 Length=1585523 Score = 109 bits (120), Expect = 5e-19 Identities = 143/197 (73%), Gaps = 1/197 (1%) Strand=Plus/Minus Query 114186 GTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCAAGTTGTTTACCA 114245 ||||| ||||| |||||||| || || | |||||| ||| || | || || ||| Sbjct 1022604 GTAGACTCTTTCTGAATGTTATAGTCAGAAAGCGTACGACCATCCTCCAACTGCTTTCCA 1022545 Query 114246 GCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTT 114305 || |||| | |||||||||||| |||||||||||||||||||| ||||||| || Sbjct 1022544 GCAAAGATCAAACGCTGTTGGTCGGGAGGAATGCCTTCTTTGTCCTGAATCTTTGCCTTG 1022485 Query 114306 AGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCAGAGTT 114365 | | || | ||||| | || ||||| || | || | ||| || ||||||| ||| Sbjct 1022484 ACATTGTCGATAGTGTCAGAAGACTCGACTTCAAGAGTGATCGTCTTTCCGGTCAATGTT 1022425 Query 114366 -TTTACAAAAATCTGCA 114381 || ||||| ||||||| Sbjct 1022424 CTTCACAAAGATCTGCA 1022408 Score = 104 bits (114), Expect = 2e-17 Identities = 149/210 (71%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 114173 AACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTC 114232 ||| | ||| | || ||||||||||| || || ||||| | ||| || |||||| Sbjct 1022390 AACAAGATGAAGAGTCGATTCTTTTTGGATATTATAATCCGAAAGAGTGCGGCCATCTTC 1022331 Query 114233 AAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGC 114292 || || || ||||| |||| ||||| |||||||| ||||| || || || || || Sbjct 1022330 TAGCTGCTTTCCAGCAAAGATAAGACGTTGTTGGTCAGGAGGGATACCCTCCTTATCCTG 1022271 Query 114293 AATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTT 114352 |||||| || | | |||| ||| || | || ||||| |||| ||| | || || Sbjct 1022270 GATCTTTGCCTTCACATTGTCAATGGTATCAGACGACTCGACCTCCAAGGTGATGGTCTT 1022211 Query 114353 GCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 ||||||| ||| || ||||| |||||||| Sbjct 1022210 TCCGGTCAAAGTCTTGACAAAGATCTGCAT 1022181 Score = 89.7 bits (98), Expect = 4e-13 Identities = 160/234 (68%), Gaps = 0/234 (0%) Strand=Plus/Plus Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212 || || |||||||| | | ||| | || | || || || || ||||||||||| || Sbjct 172068 ATGCCTCCACGTAGACGAAGAACAAGGTGAAGGGTTGACTCCTTCTGAATGTTGTAGTCA 172127 Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272 | || || |||||| || || || || ||| |||| || || ||||| || ||| Sbjct 172128 GAAAGGGTGCGTCCATCTTCGAGCTGCTTGCCGGCGAAGATTAGTCGTTGTTGATCGGGA 172187 Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCG 114332 |||||||| || || || ||||| || | | || | ||||| | || ||| Sbjct 172188 GGAATGCCCTCCTTATCCTGTATCTTGGCCTTCACGTTGTCGATCGTGTCTGAAGACTCG 172247 Query 114333 ACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATGGCT 114386 || |||| || | ||||||||| || || || || ||||| || |||||| || Sbjct 172248 ACCTCCAAAGTGATCGTTTTGCCCGTGAGGGTCTTAACAAAGATTTGCATGCCT 172301 >seq16 Length=279175 Score = 102 bits (112), Expect = 7e-17 Identities = 97/123 (79%), Gaps = 1/123 (1%) Strand=Plus/Plus Query 114155 ACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCGCT 114214 ||| ||||| || | || ||||| || | || |||||||| |||||||||||||| || Sbjct 135712 ACCACCACGAAGACGCAGCACTAAGTGAAGGGTGGATTCTTTCTGAATGTTGTAATCACT 135771 Query 114215 CATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGAGG 114274 || |||||| ||| ||||||||||| || ||| | ||||| |||||||| || || || Sbjct 135772 CAGAGTACGTCCATCCTCAAGTTGTTTTCCGGCGAAAATGAGTCGCTGTTGATCAGG-GG 135830 Query 114275 AAT 114277 ||| Sbjct 135831 AAT 135833 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 420134241267972