Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lentinula_20edodes_20[genbank_20GCA_5F001562095.1_202016-02-16] 31 sequences; 46,106,741 total letters Query= NC_009898.1 Length=368683 Score E Sequences producing significant alignments: (Bits) Value seq2 150 4e-31 seq29 91.5 3e-13 seq23 84.2 5e-11 >seq2 Length=1585523 Score = 150 bits (166), Expect = 4e-31 Identities = 161/213 (76%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 288262 AGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCT 288321 || || ||||||| || |||||||||||||||||| || | || ||||| || ||| Sbjct 1022392 AGAACAAGATGAAGAGTCGATTCTTTTTGGATATTATAATCCGAAAGAGTGCGGCCATCT 1022333 Query 288322 TCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCC 288381 |||| || ||||| || ||||| ||||| ||||| | ||||| || || |||||| Sbjct 1022332 TCTAGCTGCTTTCCAGCAAAGATAAGACGTTGTTGGTCAGGAGGGATACCCTCCTTATCC 1022273 Query 288382 TGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTC 288441 ||||| || || ||||| || || || | ||| ||| || || || | ||||| ||| Sbjct 1022272 TGGATCTTTGCCTTCACATTGTCAATGGTATCAGACGACTCGACCTCCAAGGTGATGGTC 1022213 Query 288442 TTCCCGGTCAGAGTCTTGACGAATATCTGCATT 288474 || ||||||| ||||||||| || ||||||||| Sbjct 1022212 TTTCCGGTCAAAGTCTTGACAAAGATCTGCATT 1022180 Score = 123 bits (136), Expect = 6e-23 Identities = 142/191 (74%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342 ||||| || ||||| || || | |||||||| || || || || || || || || || Sbjct 171879 TCTTTCTGAATATTGTAATCAGAAAGCGTGCGACCATCCTCCAACTGCTTGCCAGCAAAA 171938 Query 288343 ATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTT 288402 || ||||| ||||| | || || ||||| || |||||||||||||| || || || Sbjct 171939 ATGAGACGTTGTTGGTCAGGCGGAATACCTTCCTTGTCCTGGATTTTCGCCTTAACATTG 171998 Query 288403 TCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACG 288462 || |||| || ||| || || || || ||||||||||| || || || ||||||||| Sbjct 171999 TCAATAGTGTCAGACGACTCAACCTCAAGAGTGATCGTCTTTCCCGTGAGTGTCTTGACG 172058 Query 288463 AATATCTGCAT 288473 || |||||||| Sbjct 172059 AAGATCTGCAT 172069 Score = 111 bits (122), Expect = 4e-19 Identities = 140/191 (73%), Gaps = 1/191 (1%) Strand=Plus/Minus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342 ||||| || || |||||||| | ||||| || || || || || || ||||| || ||| Sbjct 1022598 TCTTTCTGAATGTTATAGTCAGAAAGCGTACGACCATCCTCCAACTGCTTTCCAGCAAAG 1022539 Query 288343 ATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTT 288402 |||| ||||||||| || || |||||||| ||||| || || || || || || Sbjct 1022538 ATCAAACGCTGTTGGTCGGGAGGAATGCCTTCTTTGTCCTGAATCTTTGCCTTGACATTG 1022479 Query 288403 TCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAG-TCTTGAC 288461 || |||| || || || ||||| || ||||||||||| ||||||| | |||| || Sbjct 1022478 TCGATAGTGTCAGAAGACTCGACTTCAAGAGTGATCGTCTTTCCGGTCAATGTTCTTCAC 1022419 Query 288462 GAATATCTGCA 288472 || ||||||| Sbjct 1022418 AAAGATCTGCA 1022408 Score = 105 bits (116), Expect = 2e-17 Identities = 138/191 (72%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342 || || || ||||| || || | |||||||| || || || || || || || || || Sbjct 171651 TCCTTCTGAATATTGTAATCAGAAAGCGTGCGACCATCCTCCAACTGCTTGCCAGCAAAA 171710 Query 288343 ATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTT 288402 || ||||| ||||| | || || ||||| || |||||||| ||||| || || || Sbjct 171711 ATGAGACGTTGTTGGTCAGGCGGAATACCTTCCTTGTCCTGGATCTTCGCCTTTACATTG 171770 Query 288403 TCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACG 288462 || || | || ||| || || || || || |||||||| || || || ||||||||| Sbjct 171771 TCAATGGTGTCCGACGACTCAACCTCCAGAGTAATCGTCTTTCCTGTGAGGGTCTTGACG 171830 Query 288463 AATATCTGCAT 288473 || |||||||| Sbjct 171831 AAGATCTGCAT 171841 >seq29 Length=5849119 Score = 91.5 bits (100), Expect = 3e-13 Identities = 135/188 (72%), Gaps = 4/188 (2%) Strand=Plus/Plus Query 269150 TGATCGGTATGAATGCCGATCTCATGAATCAATATATCGAATTCGTGGCTGATCGTATCT 269209 ||||||| ||||| || | ||| |||||||||||| ||||| || ||||| | Sbjct 5169279 TGATCGGCATGAACGCGACATTGATGTGTCAATATATCGAGTTCGTTGCCGATCGACTAC 5169338 Query 269210 TCACGGCACTCGGTTATGAGAAAGTGTACAATTCGAAGAATCCCTTCGCCTTTATGGAAC 269269 || || ||||| | |||| ||||||| |||| ||| ||||||| ||||||||| Sbjct 5169339 TCGTCGCTCTCGGCAACAAGAAGTTGTACAACTCGACGAACCCCTTCGACTTTATGGACA 5169398 Query 269270 TAATTTCGCTCGAAGGAAAGACGAACTTCTTCGAAAAGCGTGTCAGCGACTA-TCAACGT 269328 | || ||||| |||| ||||| || | || || ||||| || ||| || |||| | Sbjct 5169399 TGATCTCGCTTCAAGGGAAGACCAA--TTTTTGAGAAGCGGGTGTCCGATTACTCAAAG- 5169455 Query 269329 CCTGGTGT 269336 ||||||| Sbjct 5169456 GCTGGTGT 5169463 >seq23 Length=3600692 Score = 84.2 bits (92), Expect = 5e-11 Identities = 189/281 (67%), Gaps = 6/281 (2%) Strand=Plus/Minus Query 268483 CTGTGGAACATGTACAAGAAGGCAGTGGCAACCTTTTGGACCACCGAGGAAGTT--CCTC 268540 || ||| | ||||||||||| |||| ||| | || |||||| | || || || |||| Sbjct 3499135 CTATGGCAGATGTACAAGAAAGCAGAAGCATCGTTCTGGACCTCGGAAGAGATTGACCTC 3499076 Query 268541 TTAACGCA-GACGTTGCAGACTGGCGTGAGAAACTGAACAACGATGAACGACACTTCATC 268599 || || || ||| |||||| ||| | | ||||| || || || || |||||| Sbjct 3499075 ---ACTCATGATCTTGTCGACTGGAACGAGCGATTAAACAATGACGAGCGTCATTTCATC 3499019 Query 268600 AAACATATTCTGGGGTTCTTTGCAGGCTCCGACGGTATCGTGATGGAAAATCTTCAGACA 268659 | || | || | |||||||| | ||| ||||||||||||| |||||||| | Sbjct 3499018 ACCCACGTCCTTGCATTCTTTGCCGCCTCTGACGGTATCGTGAACGAAAATCTGTTGGAG 3498959 Query 268660 AACTTTGGTGTCGAAGTGATGGCACCAGAGGCACGACAATTCTATGCATATCAAACATTC 268719 |||| ||||||| ||| | ||||| || | || |||| | |||| | | Sbjct 3498958 CGCTTTTCAAACGAAGTGCAAGCAGCTGAGGCGCGCTACTTTTATGGGTTCCAAATAATG 3498899 Query 268720 AACGAATCCGTTCATAGTGAAATGTATGCACTTCTTATCGA 268760 | ||| ||||||| ||||| || | || |||||||| Sbjct 3498898 ATGGAAAACGTTCATTCTGAAACTTACTCTCTGCTTATCGA 3498858 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1179653931456018