Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lentinula_20edodes_20[genbank_20GCA_5F001562095.1_202016-02-16] 31 sequences; 46,106,741 total letters Query= NC_010276.1 Length=156179 Score E Sequences producing significant alignments: (Bits) Value seq2 114 1e-20 >seq2 Length=1585523 Score = 114 bits (126), Expect = 1e-20 Identities = 153/213 (72%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 64232 AGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCT 64291 || || ||||||| |||||||||||||| || || ||||| | | ||||| | ||| Sbjct 1022392 AGAACAAGATGAAGAGTCGATTCTTTTTGGATATTATAATCCGAAAGAGTGCGGCCATCT 1022333 Query 64292 TCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCT 64351 || |||||||| || ||| | || || || || ||||| ||||| || || || || || Sbjct 1022332 TCTAGCTGCTTTCCAGCAAAGATAAGACGTTGTTGGTCAGGAGGGATACCCTCCTTATCC 1022273 Query 64352 TGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTC 64411 || || ||| ||| ||| || | |||||| | || || || | || | |||| Sbjct 1022272 TGGATCTTTGCCTTCACATTGTCAATGGTATCAGACGACTCGACCTCCAAGGTGATGGTC 1022213 Query 64412 TTGCCGGTCAAAGTTTTTACGAAAATTTGCATT 64444 || ||||||||||| || || || || |||||| Sbjct 1022212 TTTCCGGTCAAAGTCTTGACAAAGATCTGCATT 1022180 Score = 98.7 bits (108), Expect = 1e-15 Identities = 146/206 (71%), Gaps = 1/206 (0%) Strand=Plus/Minus Query 64238 AGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGC 64297 ||||||| || || ||||| |||||||| || || | | || || | || || | | Sbjct 1022613 AGATGAAGGGTAGACTCTTTCTGAATGTTATAGTCAGAAAGCGTACGACCATCCTCCAAC 1022554 Query 64298 TGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATT 64357 ||||| || ||| | || | ||||| |||||||||||||| |||||||| || || || Sbjct 1022553 TGCTTTCCAGCAAAGATCAAACGCTGTTGGTCGGGAGGAATGCCTTCTTTGTCCTGAATC 1022494 Query 64358 TTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCG 64417 ||| ||| ||| || | || ||| | || ||||| | ||| | ||||| ||| Sbjct 1022493 TTTGCCTTGACATTGTCGATAGTGTCAGAAGACTCGACTTCAAGAGTGATCGTCTTTCCG 1022434 Query 64418 GTCAAAGTT-TTTACGAAAATTTGCA 64442 ||||| ||| || || || || |||| Sbjct 1022433 GTCAATGTTCTTCACAAAGATCTGCA 1022408 Score = 89.7 bits (98), Expect = 5e-13 Identities = 97/129 (75%), Gaps = 0/129 (0%) Strand=Plus/Plus Query 64231 AAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTC 64290 ||| || || |||| || || || || ||||||||||| || | | |||||| | || Sbjct 172085 AAGAACAAGGTGAAGGGTTGACTCCTTCTGAATGTTGTAGTCAGAAAGGGTGCGTCCATC 172144 Query 64291 TTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTC 64350 ||| |||||||||||||| | || || || || || ||||||||||| || || || || Sbjct 172145 TTCGAGCTGCTTGCCGGCGAAGATTAGTCGTTGTTGATCGGGAGGAATGCCCTCCTTATC 172204 Query 64351 TTGTATTTT 64359 ||||| || Sbjct 172205 CTGTATCTT 172213 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 499644606387640