Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lentinula_20edodes_20[genbank_20GCA_5F001562095.1_202016-02-16] 31 sequences; 46,106,741 total letters Query= NC_013756.1 Length=368454 Score E Sequences producing significant alignments: (Bits) Value seq2 147 5e-30 >seq2 Length=1585523 Score = 147 bits (162), Expect = 5e-30 Identities = 158/209 (76%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477 || |||||||| || || |||||||| || | ||||||||||| | || | ||||||| Sbjct 172086 AGAACAAGGTGAAGGGTTGACTCCTTCTGAATGTTGTAGTCAGAAAGGGTGCGTCCATCT 172145 Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537 || |||||||| ||||||||||| || || || || || ||| ||| || || ||| Sbjct 172146 TCGAGCTGCTTGCCGGCGAAGATTAGTCGTTGTTGATCGGGAGGAATGCCCTCCTTATCC 172205 Query 199538 TGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTC 199597 || ||||| ||||||| |||| ||||||| | || || ||||| |||||||| Sbjct 172206 TGTATCTTGGCCTTCACGTTGTCGATCGTGTCTGAAGACTCGACCTCCAAAGTGATCGTT 172265 Query 199598 TTACCCGTGAGAGTTTTCACAAAAATTTG 199626 || |||||||| || || ||||| ||||| Sbjct 172266 TTGCCCGTGAGGGTCTTAACAAAGATTTG 172294 Score = 113 bits (124), Expect = 1e-19 Identities = 157/218 (72%), Gaps = 3/218 (1%) Strand=Plus/Minus Query 199410 GAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCC 199469 |||| |||| |||| || || || ||||| || || | ||| ||||||| | || | Sbjct 1022625 GAAGACTCAC--CAAGATGAAGGGTAGACTCTTTCTGAATGTTATAGTCAGAAAGCGTAC 1022568 Query 199470 TTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTT 199529 ||||| |||| ||||||||| || ||||| | |||||| ||||| ||| ||| |||| Sbjct 1022567 GACCATCCTCCAACTGCTTTCCAGCAAAGATCAAACGCTGTTGGTCGGGAGGAATGCCTT 1022508 Query 199530 CTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACG 199589 || |||||||||||| ||| || |||| ||||| | | || || || | | Sbjct 1022507 CTTTGTCCTGAATCTTTGCCTTGACATTGTCGATAGTGTCAGAAGACTCGACTTCAAGAG 1022448 Query 199590 TGATCGTCTTACCCGTGAGAGTT-TTCACAAAAATTTG 199626 |||||||||| || || | ||| |||||||| || || Sbjct 1022447 TGATCGTCTTTCCGGTCAATGTTCTTCACAAAGATCTG 1022410 Score = 111 bits (122), Expect = 4e-19 Identities = 150/209 (72%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477 || ||||| || |||||||| || ||||||| || || || | | ||| | |||||| Sbjct 1022392 AGAACAAGATGAAGAGTCGATTCTTTTTGGATATTATAATCCGAAAGAGTGCGGCCATCT 1022333 Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537 || ||||||||||| || ||||| ||||| || ||||| ||| || || || ||| Sbjct 1022332 TCTAGCTGCTTTCCAGCAAAGATAAGACGTTGTTGGTCAGGAGGGATACCCTCCTTATCC 1022273 Query 199538 TGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTC 199597 || |||||| |||||| || | ||| || | | || || ||||| ||||| ||| Sbjct 1022272 TGGATCTTTGCCTTCACATTGTCAATGGTATCAGACGACTCGACCTCCAAGGTGATGGTC 1022213 Query 199598 TTACCCGTGAGAGTTTTCACAAAAATTTG 199626 || || || | ||| || ||||| || || Sbjct 1022212 TTTCCGGTCAAAGTCTTGACAAAGATCTG 1022184 Score = 104 bits (114), Expect = 6e-17 Identities = 146/205 (71%), Gaps = 0/205 (0%) Strand=Plus/Plus Query 199422 CAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCTTCCA 199481 ||||||| |||||||||||||| || | ||||| |||| | || | ||||| |||| Sbjct 171634 CAAGGTGAAGAGTCGACTCCTTCTGAATATTGTAATCAGAAAGCGTGCGACCATCCTCCA 171693 Query 199482 GCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCCTGAA 199541 |||||| || || || |||||||| || ||||| || ||| ||||| ||||| | Sbjct 171694 ACTGCTTGCCAGCAAAAATGAGACGTTGTTGGTCAGGCGGAATACCTTCCTTGTCCTGGA 171753 Query 199542 TCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTCTTAC 199601 |||| ||| || || | |||||| | | || || |||| || |||||||| | Sbjct 171754 TCTTCGCCTTTACATTGTCAATGGTGTCCGACGACTCAACCTCCAGAGTAATCGTCTTTC 171813 Query 199602 CCGTGAGAGTTTTCACAAAAATTTG 199626 | ||||| || || || || || || Sbjct 171814 CTGTGAGGGTCTTGACGAAGATCTG 171838 Score = 102 bits (112), Expect = 2e-16 Identities = 154/219 (70%), Gaps = 0/219 (0%) Strand=Plus/Plus Query 199408 TCGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGT 199467 |||||| | |||||||||||||| || ||||| || || | ||||| |||| | || Sbjct 171848 TCGAAGACGAAGGACAAGGTGGAGGGTTGACTCTTTCTGAATATTGTAATCAGAAAGCGT 171907 Query 199468 CCTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCC 199527 | ||||| |||| |||||| || || || |||||||| || ||||| || ||| || Sbjct 171908 GCGACCATCCTCCAACTGCTTGCCAGCAAAAATGAGACGTTGTTGGTCAGGCGGAATACC 171967 Query 199528 TTCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAA 199587 ||| ||||| || || ||| || || | ||||| | | || || || | Sbjct 171968 TTCCTTGTCCTGGATTTTCGCCTTAACATTGTCAATAGTGTCAGACGACTCAACCTCAAG 172027 Query 199588 CGTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 ||||||||||| |||||||| || || || || || || Sbjct 172028 AGTGATCGTCTTTCCCGTGAGTGTCTTGACGAAGATCTG 172066 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1178921131747077