Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lentinula_20edodes_20[genbank_20GCA_5F001562095.1_202016-02-16] 31 sequences; 46,106,741 total letters Query= NC_013953.1 Length=156344 Score E Sequences producing significant alignments: (Bits) Value seq23 199 4e-46 seq29 194 2e-44 seq31 149 6e-31 seq2 100 3e-16 >seq23 Length=3600692 Score = 199 bits (220), Expect = 4e-46 Identities = 380/552 (69%), Gaps = 11/552 (2%) Strand=Plus/Plus Query 132895 CAAGCAAAGTCGCAATGCAAGCCCTCGTCCCTGGAAATGAGTTCGTTGCTGAA--AGTCA 132952 || || || ||| ||| || || || || | | ||||| ||||| |||| ||| | Sbjct 3498579 CACGCGAAATCGGTATGTAAACCTTCATCTCGGCTGATGAGCTCGTT--TGAATAAGTTA 3498636 Query 132953 AGCCGGGCATGAGGCCGCGTTTTTTGAGCCAAAATATGGCGGCGAAACTGCCCGAAAAGA 133012 ||| ||||| |||||||| || || | ||| || |||| ||||| || ||||| | Sbjct 3498637 GGCCAGGCATCAGGCCGCGCTTCTTTAACCAGAAAATGGAAGCGAACGACCCAGAAAAAA 3498696 Query 133013 AGACGCCCTCGACGGCCGCGAAAGCCACCAGGCGCTCGCCGAACGTGGCTTC-TTTGCTG 133071 ||| |||||||| || ||||| ||||||| | ||| | || ||| |||| |||| Sbjct 3498697 AGATTCCCTCGACAGCAGCGAATGCCACCAATCTCTCTGCAAAAGTG-CTTCGTTTGTCA 3498755 Query 133072 GCGATCCAGCGCAGCGCCCATTCGGCCTTTTCTTTGACGCACGGCATCGTTTCGATGGCG 133131 | ||||| || ||||| ||||| || |||| |||||| || ||||| || ||| Sbjct 3498756 GATATCCATTTGAGGGCCCAGTCGGCTTTGCGCTTGATGCACGGTATTGTTTCTATTGCG 3498815 Query 133132 TTCAACAAACG-GAGTTTCTCTTCCGAGGAACGCACGTAGGTGTCGATGAGGGTCGAATA 133190 | || | | | | | || || | ||||| || ||||| || || || Sbjct 3498816 TCGAAGAGATATGCGCGTTGATTAAGATCCTTG-ACGTATGTATCGATAAGCAGAGAGTA 3498874 Query 133191 CATTTCCGAGTGTACGTTCTCCATGGCGATTTGAAAGCCGTAAAAGCACCGCGCCTCGAC 133250 |||| || || ||||| ||||| ||||| || || |||||| | |||||||| | Sbjct 3498875 AGTTTCAGAATGAACGTTTTCCATCATTATTTGGAACCCATAAAAGTAGCGCGCCTCAGC 3498934 Query 133251 CACCTGCACTTCTTGAGCGAAACGCTCGACCAGATTTTCGTTGACGATGCCGTCGCTGGC 133310 | |||||||| | | || ||||| | |||||||||||| ||||| ||||| ||| Sbjct 3498935 TGCTTGCACTTCGTTTGAAAAGCGCTCCAACAGATTTTCGTTCACGATACCGTCAGAGGC 3498994 Query 133311 GGCGAAAAAGGCCAGCACGTGCTTGATGAAATGGCGCTCGTTGTCGTTCAAGCGCTC--- 133367 ||| || || || || ||||| |||||||||| ||||||| | ||| || ||||| Sbjct 3498995 GGCAAAGAATGCAAGGACGTGGGTGATGAAATGACGCTCGTCATTGTTTAATCGCTCGTT 3499054 Query 133368 CCAGTCGCGCGTGTCCTTGGACAGGTCCACCTCCTCGACGGTCCAAAACGACGCCTCGGC 133427 ||||||| || | | ||||| | ||| || |||||| ||||| || || || Sbjct 3499055 CCAGTCGACAAGATCATGAGTGAGGTCAATCTCTTCCGAGGTCCAGAACGATGCTTCTGC 3499114 Query 133428 TTTTTTGTACAT 133439 ||| |||||||| Sbjct 3499115 TTTCTTGTACAT 3499126 >seq29 Length=5849119 Score = 194 bits (214), Expect = 2e-44 Identities = 381/556 (69%), Gaps = 17/556 (3%) Strand=Plus/Minus Query 132894 GCAAGCAAAGTCGCAATGCAAGCCCTCGTCCCTGGAAATGAGTTCGTTGCTGAAAGTCAA 132953 ||| || |||||| ||||| ||||| || | ||||| ||||| ||| | ||| Sbjct 5169113 GCAGGCGAAGTCGGTATGCATACCCTCATCACGACTGATGAGCTCGTTTGAGAACGCCAA 5169054 Query 132954 GCCGGGCATGAGGCCGCGTTTTTTGAGCCAAAATATGGCGGCGAAACTGCCCGAAAAGAA 133013 ||| ||||| | || || || || | |||||| |||| ||||| ||| || ||||| Sbjct 5169053 GCCAGGCATTAATCCACGCTTCTTCATCCAAAAGATGGACGCGAAGGAGCCAGAGAAGAA 5168994 Query 133014 GACGCCCTCGACGGCCGCGAAAGCCACCAGGCGCTCGCCGAA---CGTGGCTTCTTTGCT 133070 | ||| || || || || || || || || ||||||||||| || | ||| | || Sbjct 5168993 AATGCCTTCAACAGCAGCAAAGGCTACGAGACGCTCGCCGAAAACCGAGTGTTCGTCACT 5168934 Query 133071 GGCGATCCAGCGCAGCGCCCATTCGGCCTTTTCTTTGACGCACGGCATCGTTTCGATGGC 133130 | |||||| |||| ||||| |||||||| |||| ||| || || || ||||| || Sbjct 5168933 G---ATCCAGTGCAGAGCCCACTCGGCCTTGCGCTTGATGCAAGGAATAGTCTCGATAGC 5168877 Query 133131 GTTCAACAAACGGAGTTTCTCTTCCGA--GGAACGC--ACGTAGGTGTCGATGAGGGTCG 133186 | ||| || ||| | | | | ||| || | | ||| ||||||||||| | Sbjct 5168876 AT-CAAAAA--GGAAAT-CACGTTCGACAGGGTCTTTGATGTATGTGTCGATGAGAAGAG 5168821 Query 133187 AATACATTTCCGAGTGTACGTTCTCCATGGCGATTTGAAAGCCGTAAAAGCACCGCGCCT 133246 | || | || ||||| | ||||||||| || || || ||||| ||||| || |||| Sbjct 5168820 AGTAAGTCTCGGAGTGAATGTTCTCCATCATAATCTGGAACCCGTAGAAGCAACGTGCCT 5168761 Query 133247 CGACCACCTGCACTTCTTGAGCGAAACGCTCGACCAGATTTTCGTTGACGATGCCGTCGC 133306 | | ||||| ||||| | | ||| || |||| ||||| |||||||| ||||| || Sbjct 5168760 CAGCGACCTGTACTTCGTTCGAGAAGCGTTCGAGAAGATTCTCGTTGACAATGCCATCAG 5168701 Query 133307 TGGCGGCGAAAAAGGCCAGCACGTGCTTGATGAAATGGCGCTCGTTGTCGTTCAAGCG-- 133364 |||||| || || || || || | |||||| || ||| |||| |||| ||| Sbjct 5168700 AGGCGGCAAAGAACGCGAGGACACGGGAGATGAAGAATCGTTCGCTGTCATTCAGGCGGT 5168641 Query 133365 -CTCCCAGTCGCGCGTGTCCTTGGACAGGTCCACCTCCTCGACGGTCCAAAACGACGCCT 133423 | |||||| | ||| || || | |||| ||| || | ||||| || || |||| Sbjct 5168640 TGTTCCAGTCATGAAGGTCTTTTGATAAATCCATCTCTTCCGCAGTCCAGAAAGAGGCCT 5168581 Query 133424 CGGCTTTTTTGTACAT 133439 |||| || |||||||| Sbjct 5168580 CGGCCTTCTTGTACAT 5168565 >seq31 Length=1678028 Score = 149 bits (164), Expect = 6e-31 Identities = 384/577 (67%), Gaps = 21/577 (4%) Strand=Plus/Plus Query 132884 TGAACATCAAGCAAGCAAAGTCGCAATGCAAGCCCTCGTCCCTGGAAATGAGTTCGTTGC 132943 |||| || | ||| ||||||||| |||| || ||||| | || |||||||| Sbjct 618605 TGAAGATAAGGCATGCAAAGTCGGTGTGCATTCCTTCGTCACGACTGATAAGTTCGTT-- 618662 Query 132944 TGAAA--GTCAAGCCGGGCATGAGGCCGCGTTTTTTGAGCCAAAATATGGCGGCGAAACT 133001 ||||| ||||| || |||| | || |||||||||| |||||||||| |||||| Sbjct 618663 TGAAAAGGTCAACCCAGGCAATAATCCACGTTTTTTGATCCAAAATATGCACGCGAAAGA 618722 Query 133002 GCCCGAAAAGAAGACGCCCTCGACGGCCGCGAAAGCCACCAGGCGCTCGCCGAACGTGGC 133061 || || || || | || |||| ||| | ||| || || || || || | || || | Sbjct 618723 TCCGGAGAAAAAAATTCCTTCGATGGCTGAGAATGCAACGAGTCGTTCCGCAAAAGTAAC 618782 Query 133062 TTCTTTGCTGGCGATCCAGCGCAGCGCCCATTCGGCCTTTTCTTTGACGCACGGCATCGT 133121 || | | ||||||| | || |||||| | || |||| ||| | ||| || ||||| Sbjct 618783 TTGATCGTCTTCGATCCATCTTAGTGCCCATGCCGCTTTTTGTTTAATGCAAGGAATCGT 618842 Query 133122 TTCGATGGCGTTCAACAAACGGAGTTTCTCTTCCGA--GGAAC--GCACGTAGGTGTCGA 133177 |||||| | | ||||| || | || | ||| ||| | | | || || | | Sbjct 618843 TTCGATAGAACTGAACAA---GA-ATGATCGTTCGAATGGATCTTGGATATACGTTTGAA 618898 Query 133178 TGAGGGTCGAATACATTTCCGAGTGTACGTTCTCCATGGCGATT---TGAAAGCCGTAAA 133234 | || ||||| |||| || || | ||| ||||| ||| || || || || | Sbjct 618899 TCAGCAAAGAATAAGTTTCTGAATGGATGTTTTCCAT---CATTGACTGGAATCCATAGA 618955 Query 133235 AGCACCGCGCCTCGACCACCTGCACTTCTTGAGCGAAACGCTCGACCAGATTTTCGTTGA 133294 || | || ||||| | ||||| | ||| || ||| | || || |||||||| | Sbjct 618956 AGGATCGAGCCTCAGCGACCTGAATTTCACTAGAGAAGTGACGGATCAAGTTTTCGTTTA 619015 Query 133295 CGATGCCGTCGCTGGCGGCGAAAAAGGCCAGCACGTGCTTGATGAAATGGCGCTCGTTGT 133354 | || |||||| || |||||||| || ||||| | ||||| ||||||||| Sbjct 619016 CAATACCGTCGGACGCAGCGAAAAATGCTAGCACACGAGCCGTGAAAAAGCGCTCGTTTG 619075 Query 133355 CGTTCAAGCG---CTCCCAGTCGCGCGTGTCCTTGGACAGGTCCACCTCCTCGACGGTCC 133411 |||||| ||| | ||||||| || || || || ||||| | || || |||| Sbjct 619076 CGTTCATGCGGTTGTTCCAGTCGTGCAAATCGTTTGAAAGGTCTATTTCTTCCGTAGTCC 619135 Query 133412 AAAACGACGCCTCGGCTTTTTTGTACATACTCCACAT 133448 | || || ||||| |||||||||||| | | ||| || Sbjct 619136 AGAAGGAAGCCTCAGCTTTTTTGTACCTTCGCCAGAT 619172 >seq2 Length=1585523 Score = 100 bits (110), Expect = 3e-16 Identities = 139/192 (72%), Gaps = 2/192 (1%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 |||||||| || || || || |||||||||||||| ||||| | || |||||| | | Sbjct 172297 ATGCAAATCTTTGTTAAGACCCTCACGGGCAAAACGATCACTTTGGAGGTCGAGTCTTCA 172238 Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 |||| | | |||| | || | || || | || || ||||| ||||| |||| || Sbjct 172237 GACACGATCGACAACG-TGAAGGCCAAGATACAGGATAAGGAGGGCATTCCTCCCGATCA 172179 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 ||| || || || | ||| ||||| ||||| || || | |||||||| |||||||| Sbjct 172178 ACAACGACTAATCTTCGCCGGCAAGCAGCTCGAAGATGGACGCACCCTTTCTGACTACAA 172119 Query 38423 CATCCAAAAGGA 38434 ||| || ||||| Sbjct 172118 CATTCAGAAGGA 172107 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 500172606183040