Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lentinula_20edodes_20[genbank_20GCA_5F001562095.1_202016-02-16] 31 sequences; 46,106,741 total letters Query= NC_014766.1 Length=194022 Score E Sequences producing significant alignments: (Bits) Value seq23 131 2e-25 seq29 87.8 2e-12 >seq23 Length=3600692 Score = 131 bits (144), Expect = 2e-25 Identities = 319/477 (67%), Gaps = 10/477 (2%) Strand=Plus/Minus Query 112506 AAACTCCACGAAGTTACGAAAACTGTCACAAAAAACCTAAACAGAGTTATTGATAGAAAT 112565 |||||||| || ||||||||||| ||| | ||||| || | || |||||| | || Sbjct 922387 AAACTCCATGATGTTACGAAAACGGTCGCTTTCAACCTCAATCGCGTCATTGATCGCAAC 922328 Query 112566 TTTTACCCCGT---TGAGACTGCTCGTAAATCTAATATGAGACACCGTCCAATTGGTCTC 112622 | |||||| | |||| || ||| |||||| ||| | ||||||| ||||| || Sbjct 922327 TACTACCCCATCCCTGAG---GCCCGTCGATCTAACATGCGTAACCGTCCCATTGGAATC 922271 Query 112623 GGTGTCCAAGGTCTCGCGGATGTATTCAT-TCTTTGTCGCCACGCATTTGATTCCGACGA 112681 ||||| ||||||||||| || | ||||| | ||| | | | ||||| || ||| Sbjct 922270 GGTGTTCAAGGTCTCGCTGACGCCTTCATGGCATTGAAGATGC-CTTTTGACTCGCCCGA 922212 Query 112682 AGCGAAGGAAATCAATGCGCGTATATTTGAGACAATGTATCACGCCGCTCTTGAGGCGAG 112741 ||| |||||| |||| || || || |||||||| || || | |||| ||||||||| Sbjct 922211 AGCCAAGGAACTCAACACGAAGATTTTCGAGACAATTTACCATGGCGCTTGTGAGGCGAG 922152 Query 112742 TTCGGAGTTGGCAGAGGTTGATGGTCCATATGAAACCTTTGAGGGTTCTCCAGCTTCACA 112801 || || |||| || ||||||||||| || || | |||| ||| ||| || Sbjct 922151 TTGCGAAATGGCGAAGACGGATGGTCCATACGAGACGTGGATGGGTAGTCCTGCTCAGCA 922092 Query 112802 AGGGGTGCTTCAATTTGATATGTGGGAAGGTGAGACCAAGC-TTCACTACGACTGGGACG 112860 |||| | || || ||| | |||| || | ||| | | || || |||||| | Sbjct 922091 AGGGCAATTGCAGTTCGATCTATGGG-GTGTTACACCTACCGATCTCTGGGACTGGAATA 922033 Query 112861 CTCTCAAGGAACGCATCAAGGAGAAGGGTCTTCGTAACAGTCTTTTGATGGCACCAATGC 112920 | | ||||| |||| || | || | | ||| || | | |||||||||| Sbjct 922032 CGTTGAAGGAGAGCATTTCTAAGTATGGAATGAGGAACTCGCTGCTTACTGCACCAATGC 921973 Query 112921 CAACAGCCTCCACCGCACAAATCTTGGGTAATAATGAATGCTTTGAACCCTACACGA 112977 | || ||||| || || || | || || ||||||||||| || ||||||| Sbjct 921972 CTACTGCCTCTACAAGTCAGATGCTCGGCTTCAACGAATGCTTTGAGCCTTACACGA 921916 Score = 84.2 bits (92), Expect = 3e-11 Identities = 156/227 (69%), Gaps = 9/227 (4%) Strand=Plus/Minus Query 111903 GGTACAAATGGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCG 111962 || || ||||| | || |||||||| | ||||||||||| | | || || || || Sbjct 923103 GGCACGAATGGGTACTCGAATGGTATTGTGCCAATGCTTCGGGCGTACAATGCTACTGCA 923044 Query 111963 CGCTATGTAAACCAAGCTGG------GCGTCGCAAGGGATCTATCGCAGTCTATCTTGAG 112016 || ||||| |||||| ||| ||||| | ||| || |||| ||||||| || Sbjct 923043 CGATATGTCGACCAAGGTGGTAACAAGCGTC-CTGGGG--CTTTCGCTATCTATCTCGAA 922987 Query 112017 CCATGGCACGCGGATATCATGGAGTTCCTTGAGTTGCGTCTCAACCAAGGTGATGAGGAG 112076 || ||||| || |||||| | | | | | || ||| | || || || | ||||| Sbjct 922986 CCTTGGCATGCTGATATCTTCGCGATGATCGATTTGAGGAAGAATCATGGCAAAGAGGAA 922927 Query 112077 GCGCGGTGCCGCGATCTCTTCTCCGCTCTCTGGATTCCAGATCTCTT 112123 | ||| ||| ||| | |||| ||||| |||||||| |||||||| Sbjct 922926 GTGCGCGCCCGTGATTTATTCTATGCTCTATGGATTCCGGATCTCTT 922880 >seq29 Length=5849119 Score = 87.8 bits (96), Expect = 2e-12 Identities = 164/230 (71%), Gaps = 12/230 (5%) Strand=Plus/Plus Query 102090 CTCTTTGAAGCCATCCAAACAGTTCCATGTATTCAAAAGAAAG-CGGATTGGGCTATGAA 102148 || ||||| || ||| | || |||| || || ||| | ||| | || |||||| || | Sbjct 5168868 CTTTTTGATGCTATCGAGACTATTCCTTGCAT-CAAGCGCAAGGCCGAGTGGGCTCTGCA 5168926 Query 102149 GTGGTT---TGATACAAAGTCGCGTTCCTTTGCTGAGCGACTCTTCGCATTTGCGTGTGT 102205 ||| | ||| | | ||| ||| || | ||||| ||| | || ||||| ||| Sbjct 5168927 CTGGATCAGTGACGAACACTCG-GTT--TTCGGCGAGCGTCTCGTAGCCTTTGCTGCTGT 5168983 Query 102206 TGAGGGTATCTTCTTCTCTGGTTCCTTCTGCG-CTATTTATTGGCTCAAGAAGCGAGGTC 102264 ||| || || ||||||||||| |||||| ||| | || | |||| | |||||||| || Sbjct 5168984 TGAAGGCATTTTCTTCTCTGGCTCCTTC-GCGTCCATCTTTTGGATGAAGAAGCGTGGAT 5169042 Query 102265 TCATGCCAGGTCTCTGC-TTCTCCAACGAGCTTATCTCTCGTGACGAGGG 102313 | ||||| || || || ||||| |||||||| ||| |||||| ||||| Sbjct 5169043 TAATGCCTGG-CTTGGCGTTCTCAAACGAGCTCATCAGTCGTGATGAGGG 5169091 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 620742159462320