Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lentinula_20edodes_20[genbank_20GCA_5F001562095.1_202016-02-16] 31 sequences; 46,106,741 total letters Query= NC_015326.1 Length=346754 Score E Sequences producing significant alignments: (Bits) Value seq2 159 8e-34 seq12 89.7 1e-12 >seq2 Length=1585523 Score = 159 bits (176), Expect = 8e-34 Identities = 160/208 (77%), Gaps = 0/208 (0%) Strand=Plus/Plus Query 194933 CAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGA 194992 ||||||||||||| ||||| || |||||||||||||| | ||| || | ||||| || | Sbjct 171634 CAAGGTGAAGAGTCGACTCCTTCTGAATATTGTAATCAGAAAGCGTGCGACCATCCTCCA 171693 Query 194993 GCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAA 195052 |||||| || || || || || ||||||||||| || ||||| ||||| ||||| || | Sbjct 171694 ACTGCTTGCCAGCAAAAATGAGACGTTGTTGGTCAGGCGGAATACCTTCCTTGTCCTGGA 171753 Query 195053 TTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTC 195112 | || ||| || || |||||||||||||| || || || || |||| |||||||| Sbjct 171754 TCTTCGCCTTTACATTGTCAATGGTGTCCGACGACTCAACCTCCAGAGTAATCGTCTTTC 171813 Query 195113 CTGTCAAAGTTTTTACGAACACTTGCAT 195140 |||| | || || ||||| | ||||| Sbjct 171814 CTGTGAGGGTCTTGACGAAGATCTGCAT 171841 Score = 159 bits (176), Expect = 8e-34 Identities = 162/211 (77%), Gaps = 0/211 (0%) Strand=Plus/Minus Query 194931 AACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTC 194990 |||||| |||||||| || |||||||| ||||| ||||| | |||||| | |||||||| Sbjct 1022390 AACAAGATGAAGAGTCGATTCTTTTTGGATATTATAATCCGAAAGAGTGCGGCCATCTTC 1022331 Query 194991 GAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTG 195050 |||||||| || || |||||||| ||||||||||| ||||| || || || || || || Sbjct 1022330 TAGCTGCTTTCCAGCAAAGATAAGACGTTGTTGGTCAGGAGGGATACCCTCCTTATCCTG 1022271 Query 195051 AATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTT 195110 || ||| ||| || || |||||||| || || || || || | ||| | ||||| Sbjct 1022270 GATCTTTGCCTTCACATTGTCAATGGTATCAGACGACTCGACCTCCAAGGTGATGGTCTT 1022211 Query 195111 TCCTGTCAAAGTTTTTACGAACACTTGCATT 195141 ||| |||||||| || || || | |||||| Sbjct 1022210 TCCGGTCAAAGTCTTGACAAAGATCTGCATT 1022180 Score = 156 bits (172), Expect = 9e-33 Identities = 151/194 (78%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 194933 CAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGA 194992 |||| ||||| || |||||||| ||||| || || || | ||| || | ||||| || | Sbjct 1022615 CAAGATGAAGGGTAGACTCTTTCTGAATGTTATAGTCAGAAAGCGTACGACCATCCTCCA 1022556 Query 194993 GCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAA 195052 |||||| || || ||||| | || |||||||| |||||||||||||||||||| |||| Sbjct 1022555 ACTGCTTTCCAGCAAAGATCAAACGCTGTTGGTCGGGAGGAATGCCTTCTTTGTCCTGAA 1022496 Query 195053 TTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTC 195112 | ||| |||||| || || || ||||| ||| || |||||||| || | |||||||| Sbjct 1022495 TCTTTGCCTTGACATTGTCGATAGTGTCAGAAGACTCGACTTCAAGAGTGATCGTCTTTC 1022436 Query 195113 CTGTCAAAGTTTTT 195126 | ||||| ||| || Sbjct 1022435 CGGTCAATGTTCTT 1022422 Score = 147 bits (162), Expect = 5e-30 Identities = 158/209 (76%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 |||||||| || || |||||||| |||||||||||||| | ||| || | ||||| || Sbjct 171861 ACAAGGTGGAGGGTTGACTCTTTCTGAATATTGTAATCAGAAAGCGTGCGACCATCCTCC 171920 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051 | |||||| || || || || || ||||||||||| || ||||| ||||| ||||| || Sbjct 171921 AACTGCTTGCCAGCAAAAATGAGACGTTGTTGGTCAGGCGGAATACCTTCCTTGTCCTGG 171980 Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTT 195111 ||||| ||| || || ||||| ||||| || || || ||||| || | ||||||| Sbjct 171981 ATTTTCGCCTTAACATTGTCAATAGTGTCAGACGACTCAACCTCAAGAGTGATCGTCTTT 172040 Query 195112 CCTGTCAAAGTTTTTACGAACACTTGCAT 195140 || || | || || ||||| | ||||| Sbjct 172041 CCCGTGAGTGTCTTGACGAAGATCTGCAT 172069 Score = 145 bits (160), Expect = 2e-29 Identities = 158/210 (75%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 194931 AACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTC 194990 |||||||||||| || ||||| || ||||| ||||| || | ||| || | |||||||| Sbjct 172088 AACAAGGTGAAGGGTTGACTCCTTCTGAATGTTGTAGTCAGAAAGGGTGCGTCCATCTTC 172147 Query 194991 GAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTG 195050 ||||||||| || |||||||| ||||||||||| || ||||||||||| || || || || Sbjct 172148 GAGCTGCTTGCCGGCGAAGATTAGTCGTTGTTGATCGGGAGGAATGCCCTCCTTATCCTG 172207 Query 195051 AATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTT 195110 || || ||| ||||| || || ||||| ||| || || || | || | ||| || Sbjct 172208 TATCTTGGCCTTCACGTTGTCGATCGTGTCTGAAGACTCGACCTCCAAAGTGATCGTTTT 172267 Query 195111 TCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 || || | || || || || | |||||| Sbjct 172268 GCCCGTGAGGGTCTTAACAAAGATTTGCAT 172297 Score = 98.7 bits (108), Expect = 2e-15 Identities = 85/104 (82%), Gaps = 1/104 (1%) Strand=Plus/Plus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 |||||||| || ||||| || || ||||| ||||| |||| ||| |||| ||||||||| Sbjct 172317 ACAAGGTGGAGTGTGGATTCCTTCTGAATGTTGTAGTCGGAAAG-GTTCGACCATCTTCG 172375 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAAT 195035 |||||||| || || || ||||| ||||||||||| || || || Sbjct 172376 AGCTGCTTCCCCGCAAATATAAGACGTTGTTGGTCAGGTGGGAT 172419 Score = 86.0 bits (94), Expect = 1e-11 Identities = 84/106 (79%), Gaps = 3/106 (3%) Strand=Plus/Plus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 || ||||| || |||||||||||||| || |||||||| | ||||| | | || || Sbjct 172600 ACTAGGTGGAGGGTGGACTCTTTTTGGATGTTGTAATCCGAGAGAGTCGT--CGTCCTCA 172657 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGC 195037 || ||||| || ||||| | || |||||||||||||||||||||| Sbjct 172658 AGTTGCTTTCCAGCGAAAACAA-ACGTTGTTGGTCTGGAGGAATGC 172702 >seq12 Length=4000690 Score = 89.7 bits (98), Expect = 1e-12 Identities = 79/99 (80%), Gaps = 0/99 (0%) Strand=Plus/Minus Query 194937 GTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTG 194996 ||| || || || || || ||||| || || |||| |||||||| ||||||||||| || Sbjct 1092375 GTGGAGCGTCGATTCCTTCTGAATGTTATAGTCGGAAAGAGTTCGTCCATCTTCGAGTTG 1092316 Query 194997 CTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAAT 195035 ||| || |||||||| | |||||||| || |||||||| Sbjct 1092315 CTTTCCGGCGAAGATCAAACGTTGTTGATCAGGAGGAAT 1092277 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1109481159327777