Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lentinula_20edodes_20[genbank_20GCA_5F001562095.1_202016-02-16] 31 sequences; 46,106,741 total letters Query= NC_015398.1 Length=101487 Score E Sequences producing significant alignments: (Bits) Value seq2 105 4e-18 >seq2 Length=1585523 Score = 105 bits (116), Expect = 4e-18 Identities = 138/191 (72%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850 || ||||||||||| ||||| |||||| | ||| |||| || ||||| || ||||| || Sbjct 172107 TCCTTCTGAATGTTGTAGTCAGAAAGGGTGCGTCCATCTTCGAGCTGCTTGCCGGCGAAG 172166 Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910 ||||||||||| || || | || | |||||||| || ||||| || ||| Sbjct 172167 ATTAGTCGTTGTTGATCGGGAGGAATGCCCTCCTTATCCTGTATCTTGGCCTTCACGTTG 172226 Query 34911 GCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACA 34970 | |||| || | ||| || || | || || ||||| |||||||| ||||| ||| Sbjct 172227 TCGATCGTGTCTGAAGACTCGACCTCCAAAGTGATCGTTTTGCCCGTGAGGGTCTTAACA 172286 Query 34971 AAGATCTGCAT 34981 ||||| ||||| Sbjct 172287 AAGATTTGCAT 172297 Score = 95.1 bits (104), Expect = 8e-15 Identities = 136/192 (71%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 34790 TTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAA 34849 |||||| || || ||||| |||||||| | || |||| || ||||| ||||| ||||| Sbjct 1022372 TTCTTTTTGGATATTATAATCCGAAAGAGTGCGGCCATCTTCTAGCTGCTTTCCAGCAAA 1022313 Query 34850 TATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGA 34909 || || ||||| ||||| | || | |||||||| || ||||| || || Sbjct 1022312 GATAAGACGTTGTTGGTCAGGAGGGATACCCTCCTTATCCTGGATCTTTGCCTTCACATT 1022253 Query 34910 TGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCAC 34969 | || | ||| | ||| || || | ||| ||||| ||||| || | |||||| || Sbjct 1022252 GTCAATGGTATCAGACGACTCGACCTCCAAGGTGATGGTCTTTCCGGTCAAAGTCTTGAC 1022193 Query 34970 AAAGATCTGCAT 34981 |||||||||||| Sbjct 1022192 AAAGATCTGCAT 1022181 Score = 93.3 bits (102), Expect = 3e-14 Identities = 135/191 (71%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850 ||||||||||| || || || ||||| | || |||| |||| ||| || || ||||| Sbjct 171879 TCTTTCTGAATATTGTAATCAGAAAGCGTGCGACCATCCTCCAACTGCTTGCCAGCAAAA 171938 Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910 || || ||||| ||||| |||| | || |||||||| || ||| || || Sbjct 171939 ATGAGACGTTGTTGGTCAGGCGGAATACCTTCCTTGTCCTGGATTTTCGCCTTAACATTG 171998 Query 34911 GCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACA 34970 | || | ||| | |||||| || | || || || ||||||||||| ||||| || Sbjct 171999 TCAATAGTGTCAGACGACTCAACCTCAAGAGTGATCGTCTTTCCCGTGAGTGTCTTGACG 172058 Query 34971 AAGATCTGCAT 34981 ||||||||||| Sbjct 172059 AAGATCTGCAT 172069 Score = 86.0 bits (94), Expect = 4e-12 Identities = 139/196 (71%), Gaps = 8/196 (4%) Strand=Plus/Plus Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850 || |||||||| || || || ||||| | || |||| |||| ||| || || ||||| Sbjct 171651 TCCTTCTGAATATTGTAATCAGAAAGCGTGCGACCATCCTCCAACTGCTTGCCAGCAAAA 171710 Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910 || || ||||| ||||| |||| | || |||||||| |||||| || || || Sbjct 171711 ATGAGACGTTGTTGGTCAGGCGGAATACCTTCCTTGTCCTGGATCTTCGCCTTTAC--AT 171768 Query 34911 GCTATCGAT--TCACCGGC--CTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTT 34966 | || || | ||| | |||||| || | || || || ||||| ||||| ||||| Sbjct 171769 --TGTCAATGGTGTCCGACGACTCAACCTCCAGAGTAATCGTCTTTCCTGTGAGGGTCTT 171826 Query 34967 CACAAAGATCTGCATA 34982 || |||||||||||| Sbjct 171827 GACGAAGATCTGCATA 171842 Score = 86.0 bits (94), Expect = 4e-12 Identities = 138/195 (71%), Gaps = 9/195 (5%) Strand=Plus/Minus Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850 |||||||||||||||||||| ||||| | || |||| |||| ||| ||||| ||||| Sbjct 1022598 TCTTTCTGAATGTTATAGTCAGAAAGCGTACGACCATCCTCCAACTGCTTTCCAGCAAAG 1022539 Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910 || | || || ||||| | || | || || ||||| |||||| ||||| || Sbjct 1022538 ATCAAACGCTGTTGGTCGGGAGGAATGCCTTCTTTGTCCTGAATCTTTGCCTTGAC--AT 1022481 Query 34911 GCTATCGAT----TCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAG-TCT 34965 | ||||| ||| | ||| || || | || || || ||||| || | | ||| Sbjct 1022480 --TGTCGATAGTGTCAGAAGACTCGACTTCAAGAGTGATCGTCTTTCCGGTCAATGTTCT 1022423 Query 34966 TCACAAAGATCTGCA 34980 ||||||||||||||| Sbjct 1022422 TCACAAAGATCTGCA 1022408 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 324633477349368