Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lentinula_20edodes_20[genbank_20GCA_5F001562095.1_202016-02-16] 31 sequences; 46,106,741 total letters Query= NC_016072.1 Length=1259197 Score E Sequences producing significant alignments: (Bits) Value seq29 161 8e-34 seq28 136 3e-26 seq4 122 7e-22 seq16 87.8 1e-11 seq2 87.8 1e-11 >seq29 Length=5849119 Score = 161 bits (178), Expect = 8e-34 Identities = 464/711 (65%), Gaps = 22/711 (3%) Strand=Plus/Plus Query 551899 TTCGTCGTCTAAGAACTGCTTGCGAAAGAGCCAAACGAGCTCTTTCATCTGGTACTCAAA 551958 |||||||||| | |||||||||||| | ||||| || || | || |||| |||| | Sbjct 3849705 TTCGTCGTCTCCGTACTGCTTGCGAACGTGCCAAGCGTACTTTATCTTCTGCCGCTCAGA 3849764 Query 551959 CCACTATTGAAGTAGATTCATTATTTGAGGGAATTGATTATAATACGCCTATTTCGAGGG 552018 || | || ||| | ||||| || | |||||| ||||| | | || | || | | | Sbjct 3849765 CCTCGATCGAAATTGATTCCTTGTATGAGGGTATTGACTTCTACACTTCCCTTACACGTG 3849824 Query 552019 CCAAATTTGAAGATATTTGTTCTGATCTCTTTAGAAAAACAATTGAACCAGTAGAACAAG 552078 || || || || | || | || || | | || | || || || || | | Sbjct 3849825 CCCGTTTCGAGGAACTCTGCCAGGGCCTTTTCCGTAGCACTCTCGATCCTGTCGAGAAGG 3849884 Query 552079 TTTTAAGAGATTCAAAGATTGATAAATCCAAAGTACATGAAATTGTGCTTGTTGGTGGAT 552138 | | | ||||| ||||||||||| |||| ||||| ||||| || ||||| || || | Sbjct 3849885 TCCTTCGCGATTCCAAGATTGATAAGGCCAACGTACACGAAATCGTCCTTGTCGGCGGTT 3849944 Query 552139 CTACAAGAATTCCTAAAATTCGCGAAATGTTAAGTTCTTAT--------TTCAATGGTAA 552190 | || | |||||| || | || ||| || | | ||||||||||| Sbjct 3849945 CGACTCGTATTCCT--------CGTATCGTCAAGCTCGTCTCCGACTTCTTCAATGGTAA 3849996 Query 552191 AAAATTAAATGAAAGTGTTAATCCAGATGAGGCTGTTGCCTATGGTGCCGCAATTCAAGC 552250 | || | || | || || ||||||||||||||||| ||||| || | ||||| Sbjct 3849997 GGAGCCCAACAAGAGCATCAACCCTGATGAGGCTGTTGCCTACGGTGCTGCTGTCCAAGC 3850056 Query 552251 AGCTATTCTTTCTGGACAAACTGATGAAAA-ACTACAAAATATTGTACTTGTAGATGTTA 552309 || || || || || | ||| ||| || ||| || || | | || | || || Sbjct 3850057 TGCGATCCTATCCGGTGACACTTCTGAGAAGACT-CAGGATCTACTTCTCCTCGACGTCT 3850115 Query 552310 CTCCTCTATCTCTTGGTTTAGAAACAGTTGGAGGTATTATGACTAATCTTATCGATAGAA 552369 |||| || ||||| ||| | ||||| | ||| ||| | ||||| | ||| | | | Sbjct 3850116 CTCCCCTCTCTCTCGGTATTGAAACTGCTGGTGGTGTGATGACCGCACCCATCAAGCGTA 3850175 Query 552370 ATACTACTATTCCTTGTAAAAAATCTCGTGTATTTTCTACGTATTCAGATAATCAAACTG 552429 | || ||| | || || || ||| ||||| || || | ||||| ||| ||| Sbjct 3850176 ACACCACTGTCCCGATCAAGAAGTCTGAAACCTTTTCAACTTACGCTGATAACCAACCTG 3850235 Query 552430 CTGTTACAATTCAAATTTTTGAAGGAGAAAGAAAATTCACTAAAGATAATAATCAACTTG 552489 ||| || ||| | || || || ||| | |||||| || || || | |||| Sbjct 3850236 GTGTGCTCATCCAAGTCTTCGAGGGTGAACGTGCTCGCACTAAGGACAACAACCTCCTTG 3850295 Query 552490 GTACTTTTAA--TTTAGAAGGTATTCCTCCTGCTCCTCGTGGAGTACCGCAAATTGAAGT 552547 | | || | ||| | |||| || |||||||| ||||| ||||| |||||||| || Sbjct 3850296 GGAAGTTCGAGCTTTCTA--GTATCCCACCTGCTCCCCGTGGTGTACCTCAAATTGAGGT 3850353 Query 552548 TACTTTCGATATCGATGCCAATGGAATTTTGAATGTGACTGCTTGTGATAA 552598 || || || ||||||||||| || ||||||||||| |||| |||||| Sbjct 3850354 CACCTTTGACATCGATGCCAACGGTATTTTGAATGTTTCTGCCGCTGATAA 3850404 Score = 96.9 bits (106), Expect = 3e-14 Identities = 157/221 (71%), Gaps = 4/221 (2%) Strand=Plus/Plus Query 550319 TCACCAGAACAAATTTCATCTATGGTTTTAATGAAAATGAAACAAACAGCCAGTGCTTTT 550378 ||| | ||| |||| || || ||||| | | ||||||||| |||| ||| || || Sbjct 3849210 TCATCTGAAGAAATATCTTCGATGGTCCTCCTCAAAATGAAAGAAACCGCCGAAGCATTC 3849269 Query 550379 GTTGGT-CAAGAAGTTACGGATGCAGTAATAACTGTACCAGCATATTTTAATGACTCACA 550437 |||| | | | | || | |||| | || || || || || || |||||||| || Sbjct 3849270 CTTGGCACCACTA-TCACCAACTCAGTCGTGACCGTTCCCGCTTACTTCAATGACTCTCA 3849328 Query 550438 ACGTCAAGCTACTAAAGATGCTGGACGTAT-TGCTGGACTTAATGTTCTTCGTATTATCA 550496 |||||| || || || || || ||| || ||| ||| | ||||| || ||||| |||| Sbjct 3849329 ACGTCAGGCAACCAAGGACGCCGGAACCATATGC-GGAATGAATGTCCTCCGTATCATCA 3849387 Query 550497 ATGAACCTACTGCTGCTGCACTTGCATATGGACTTGATAAA 550537 ||||||| ||||| || || |||| ||||| ||||| ||| Sbjct 3849388 ATGAACCAACTGCCGCGGCGATTGCTTATGGCCTTGACAAA 3849428 >seq28 Length=2065898 Score = 136 bits (150), Expect = 3e-26 Identities = 460/702 (66%), Gaps = 11/702 (2%) Strand=Plus/Minus Query 551899 TTCGTCGTCTAAGAACTGCTTGCGAAAGAGCCAAACGAGCTCTTTCATCTGGTACTCAAA 551958 |||||||||| | || ||||||||| | ||||| || || | || |||| |||| | Sbjct 1026724 TTCGTCGTCTCCGTACCGCTTGCGAACGTGCCAAGCGTACTTTGTCTTCTGCCGCTCAGA 1026665 Query 551959 CCACTATTGAAGTAGATTCATTATTTGAGGGAATTGATTATAATACGCCTATTTCGAGGG 552018 || | || ||| | ||||| || | |||||| ||||| | | || | || | | | Sbjct 1026664 CCTCGATCGAAAT-GATTCCTTGTATGAGGGTATTGACTTCTACACTTCCCTTACACGTG 1026606 Query 552019 CCAAATTTGAAGATATTTGTTCTGATCTCTTTAGAAAAACAATTGAACCAGTAGAACAAG 552078 || || || || | || | || || || | | || | || || || || | | Sbjct 1026605 CCCGTTTCGAGGAACTCTGC-CAGACCT-TTCCGTAGCACTCTCGATCCTGTCGAGAAGG 1026548 Query 552079 TTTTAAGAGATTCAAAGATTGATAAATCCAAAGTACATGAAATTGTGCTTGTTGGTGGAT 552138 | | | ||||| ||||||||||| |||| || || ||||| || ||||| || || | Sbjct 1026547 TCCTTCGCGATTCCAAGATTGATAAGGCCAATGTGCACGAAATCGTCCTTGTCGGCGGTT 1026488 Query 552139 CTACAAGAATTCCTAAAATTCGCGAAAT-GTTAAGTTCTTATTTCAATGGTAAAAAATTA 552197 | || | |||||| || | | | || ||| ||| |||||||| | Sbjct 1026487 CAACTCGTATTCCTCGTATCGTCAAGCTCGTCTCCGACTTCTTT-AATGGTAAGGAGCCC 1026429 Query 552198 AATGAAAGTGTTAATCCAGATGAGGCTGTTGCCTATGGTGCCGCAATTCAAGCAGCTATT 552257 || | || |||| || ||||||||||||||||| ||||| || | ||||| || || Sbjct 1026428 AACAAGAGCATTAACCC-GATGAGGCTGTTGCCTACGGTGCTGCTGTCCAAGCTGCGAT- 1026371 Query 552258 CTTTCTGGACAAACTGATGAAAA-ACTACAAAATATTGTACTTGTAGATGTTACTCCTCT 552316 || || || | ||| ||| || ||| || || | | || | || || |||| || Sbjct 1026370 CTATCCGGTGACACTTCTGAGAAGACT-CAGGATCTACTTCTCCTCGACGTCTCTCCCCT 1026312 Query 552317 ATCTCTTGGTTTAGAAACAGTTGGAGGTATTATGACTAATCTTATCGATAGAAATACTAC 552376 || || ||| | ||||| | ||| ||| | ||||| || ||| | | || || || Sbjct 1026311 CTCCCTCGGTATTGAAACTGCTGGTGGTGTGATGACCGCACTCATCAAGCGTAACACCAC 1026252 Query 552377 TATTCCTTGTAAAAAATCTCGTGTATTTTCTACGTATTCAGATAATCAAACTGCTGTTAC 552436 | | || || || ||| || || || || | ||||| ||| ||| ||| Sbjct 1026251 TGTCCCGAC-AAGAAGTCTGAAACCTTCTCAACTTACGCCGATAACCAACCTGGTGTGCT 1026193 Query 552437 AATTCAAATTTTTGAAGGAGAAAGAAAATTCACTAAAGATAATAATCAACTTGGTACTTT 552496 || ||| | || || || ||| | |||||| || || || | ||||| | || Sbjct 1026192 CATCCAAGTCTTCGAGGGTGAACGTGCTCGCACTAAGGACAACAACCTCCTTGGGAATTC 1026133 Query 552497 TAATTTAGAAGGTATTCCTCCTGCTCCTCGTGGAGTACCGCAAATTGAAGTTACTTTCGA 552556 | || ||||| || |||||||| ||||| ||||| ||||| || || || ||||| Sbjct 1026132 GAGCTTTCT-GGTATCCCACCTGCTCCCCGTGGTGTACCTCAAATCGAGGTCACCTTCGA 1026074 Query 552557 TATCGATGCCAATGGAATTTTGAATGTGACTGCTTGTGATAA 552598 ||||||||||| || || |||||||| |||| |||||| Sbjct 1026073 CATCGATGCCAACGGTATCTTGAATGTTTCTGCCGCTGATAA 1026032 Score = 96.9 bits (106), Expect = 3e-14 Identities = 101/133 (76%), Gaps = 0/133 (0%) Strand=Plus/Minus Query 550019 TATAGTTGTGTTGGTGTTTGGCAAAATGGTAAAGTTGAAATTATTGCCAATGATCAAGGT 550078 || || ||||| ||||| |||||||| | | ||||||||||||||||||||| |||||| Sbjct 1027615 TACAGGTGTGTCGGTGTGTGGCAAAACGATCGAGTTGAAATTATTGCCAATGACCAAGGT 1027556 Query 550079 AACAGAACTACTCCATCTTATGTTTCTTTCACGGAAACTGAACATTTAGTTGGTGATGCA 550138 ||| |||| || || || ||||| | ||||| || || | | | | |||||||| Sbjct 1027555 AACCGAACGACGCCTTCCTATGTCGCCTTCACCGACGGAGAGCGTCTTATCGGTGATGCC 1027496 Query 550139 GCAAAATATCAAG 550151 ||||| | |||| Sbjct 1027495 GCAAAGAACCAAG 1027483 Score = 89.7 bits (98), Expect = 4e-12 Identities = 88/114 (77%), Gaps = 0/114 (0%) Strand=Plus/Plus Query 550411 TGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGATGCTGGACGTATTGC 550470 |||||| || || ||||||||||| || ||| || || ||||| ||||| ||| || Sbjct 1140279 TGTACCTGCCTACTTTAATGACTCCCAGCGTTTGGCAACAAAAGACGCTGGTGCTATCGC 1140338 Query 550471 TGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGCACTTGCATA 550524 ||| || ||||||| ||||| |||||||| || |||||||| || |||| || Sbjct 1140339 TGGCCTCGATGTTCTCCGTATCATCAATGAGCCAACTGCTGCCGCTATTGCTTA 1140392 >seq4 Length=1205196 Score = 122 bits (134), Expect = 7e-22 Identities = 109/137 (80%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 550400 GCAGTAATAACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGATGCT 550459 || || || || || || || || || |||||| | ||||||||||| || ||||| ||| Sbjct 430925 GCTGTTATCACGGTCCCTGCCTACTTCAATGACGCCCAACGTCAAGCCACGAAAGACGCT 430866 Query 550460 GGACGTATTGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGCACTT 550519 || | |||||||| ||| ||||||||||| | |||||||||||||| ||||| ||| | Sbjct 430865 GGTCAGATTGCTGGTCTTGATGTTCTTCGTGTCATCAATGAACCTACGGCTGCCGCATTG 430806 Query 550520 GCATATGGACTTGATAA 550536 || ||||| ||||| || Sbjct 430805 GCCTATGGTCTTGACAA 430789 >seq16 Length=279175 Score = 87.8 bits (96), Expect = 1e-11 Identities = 89/115 (77%), Gaps = 1/115 (1%) Strand=Plus/Plus Query 563257 AGACGGAGTACAAGATGAAGGGTACTTTCTTTGGTAATATTGTAATCAGCTAGAGTTCTT 563316 ||||| || || | |||||||| |||||| ||| ||||||||| ||||| | | Sbjct 135722 AGACGCAGCACTAAGTGAAGGGTGGATTCTTTCTGAATGTTGTAATCACTCAGAGTACGT 135781 Query 563317 GAATCTTCAAGTTGTTTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTC 563371 ||| ||||||||||||||||| ||||| |||| || |||||||| ||||||| Sbjct 135782 CCATCCTCAAGTTGTTTTCCGGCGAAAATGAGTCGCTGTTGATCAGG-GGAATTC 135835 >seq2 Length=1585523 Score = 87.8 bits (96), Expect = 1e-11 Identities = 113/156 (72%), Gaps = 0/156 (0%) Strand=Plus/Minus Query 563261 GGAGTACAAGATGAAGGGTACTTTCTTTGGTAATATTGTAATCAGCTAGAGTTCTTGAAT 563320 |||| ||||||||||| || |||||| ||||| ||||| | ||||| | || Sbjct 1022394 GGAGAACAAGATGAAGAGTCGATTCTTTTTGGATATTATAATCCGAAAGAGTGCGGCCAT 1022335 Query 563321 CTTCAAGTTGTTTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCCTTCTTTAT 563380 |||| || || ||||| ||||| ||||| | ||| || |||||||| || || || |||| Sbjct 1022334 CTTCTAGCTGCTTTCCAGCAAAGATAAGACGTTGTTGGTCAGGAGGGATACCCTCCTTAT 1022275 Query 563381 CTTGAATTTTTTGTTTTACTGCCTCAATTGTATCAG 563416 | || || ||| || || ||||| ||||||| Sbjct 1022274 CCTGGATCTTTGCCTTCACATTGTCAATGGTATCAG 1022239 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 4029294360580190