Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lentinula_20edodes_20[genbank_20GCA_5F001562095.1_202016-02-16] 31 sequences; 46,106,741 total letters Query= NC_016924.1 Length=185139 Score E Sequences producing significant alignments: (Bits) Value seq9 129 7e-25 seq31 91.5 2e-13 >seq9 Length=652519 Score = 129 bits (142), Expect = 7e-25 Identities = 246/356 (69%), Gaps = 6/356 (2%) Strand=Plus/Minus Query 37170 AATAA-ACATGCAAAATCACAATGTAAACCTTCATCTCTA-CTTATCAATTCATTAGAAA 37227 ||||| ||||||||| ||| ||| | |||||||| | || || | |||||| || | Sbjct 464848 AATAAGACATGCAAATTCAGTATGCATTCCTTCATCGCCGGCTGATGAGTTCATTTGAGA 464789 Query 37228 AGGTTAATCCTGGCATTAAACCTCtttttttAATCCAAAATATTGCTGCAAAAGATCCAG 37287 | || || || ||||| || |||| || || ||||||||||| ||||| || ||| Sbjct 464788 ACGTCAAACCCGGCATCAACCCTCGCTTCTTCATCCAAAATATGCAGGCAAACGACGCAG 464729 Query 37288 AAAAGAAAATACCTTCAACTGCTGCAAATGCTACAAGACG-TGTACCGAAAGTTGAA-CT 37345 |||| || || ||||| | |||||||||||||| | ||| | | | ||| |||| || Sbjct 464728 AAAAAAATATGCCTTCGATCGCTGCAAATGCTACCAAACGCTCTGC--AAATGTGAATCT 464671 Query 37346 ATAATCAGAAATCCAtttttttGTCCAATCTGCCTTTAATTTAACACATTCAATTGTTTC 37405 || ||| |||||||| | ||| | ||| ||| ||||| || ||| ||||| Sbjct 464670 ATTATCTTGAATCCATTGAAGCGCCCATTTTGCTTTTCTTTTAATGCACGGAATAGTTTC 464611 Query 37406 AATTGCTTTTAAGAGAAAGtttttttCTTCACTATCTGTTATATAAGTATCAATTAGTAA 37465 ||| | || || | | ||| | |||| ||||| || | ||| || || Sbjct 464610 AATAGAGTTGAATAACATCGAACGCTCTGGAGCATCTCGAATATAGGTTTGAATAAGCAA 464551 Query 37466 ACTATACATTTCAGAGTGAATATTTTCAATAGCTATCTGAAAACCATAAAAACACC 37521 | || ||||||| ||||||||||| || ||||| |||||||| ||||||| Sbjct 464550 AGAGTAGGTTTCAGAATGAATATTTTCCATCATAATCTGGAAACCATAGAAACACC 464495 >seq31 Length=1678028 Score = 91.5 bits (100), Expect = 2e-13 Identities = 112/153 (73%), Gaps = 0/153 (0%) Strand=Plus/Plus Query 37176 CATGCAAAATCACAATGTAAACCTTCATCTCTACTTATCAATTCATTAGAAAAGGTTAAT 37235 |||||||| || || | ||||| || | ||| || | ||| || |||||||| || Sbjct 618616 CATGCAAAGTCGGTGTGCATTCCTTCGTCACGACTGATAAGTTCGTTTGAAAAGGTCAAC 618675 Query 37236 CCTGGCATTAAACCTCtttttttAATCCAAAATATTGCTGCAAAAGATCCAGAAAAGAAA 37295 || |||| ||| || | |||||| ||||||||||| || |||||||| || || ||| Sbjct 618676 CCAGGCAATAATCCACGTTTTTTGATCCAAAATATGCACGCGAAAGATCCGGAGAAAAAA 618735 Query 37296 ATACCTTCAACTGCTGCAAATGCTACAAGACGT 37328 || ||||| | |||| ||||| || || ||| Sbjct 618736 ATTCCTTCGATGGCTGAGAATGCAACGAGTCGT 618768 Score = 87.8 bits (96), Expect = 2e-12 Identities = 133/188 (71%), Gaps = 10/188 (5%) Strand=Plus/Plus Query 36900 ACTCGTCTTTCGAAAAAATTTGTCTTTCCTTCTAGTGATATATTTTCCATAAAATCAAAT 36959 ||||| |||| ||||||||||| |||||||| || ||||| | ||||| |||||||| Sbjct 618286 ACTCGCTTTTCAAAAAAATTTGTTTTTCCTTCCAGAGATATCATGTCCATGAAATCAAAA 618345 Query 36960 GGATT-----AGATGTATTATATATAGTACTACATGATAATTCCTTCAGAAGCCTATCCG 37014 || || | ||||| || | | || | || | | | || || || | ||||| Sbjct 618346 GGGTTTCTGACGTTGTATAATTTGTTGTTC-CCA----AGTGCATTAAGCAGTCCATCCG 618400 Query 37015 CAACAAATTCTATGTATTTACACATTAGTTCATAGTTTATACCAATTAGTTTTACTGGAA 37074 ||| || || |||||| | ||||| || ||||| || || || || | | ||||||| Sbjct 618401 CAATGAACTCGATGTATATGCACATCAGCTCATAATTCATTCCTATCAAGTCAACTGGAA 618460 Query 37075 TTGCATCT 37082 | |||||| Sbjct 618461 TAGCATCT 618468 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 592316570477240