Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lentinula_20edodes_20[genbank_20GCA_5F001562095.1_202016-02-16] 31 sequences; 46,106,741 total letters Query= NC_018875.1 Length=119082 Score E Sequences producing significant alignments: (Bits) Value seq2 107 1e-18 >seq2 Length=1585523 Score = 107 bits (118), Expect = 1e-18 Identities = 139/192 (72%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 48575 CTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAA 48634 ||| || ||||||||||||||||| || | ||| | || ||||||||||| || ||||| Sbjct 171650 CTCCTTCTGAATATTGTAATCAGAAAGCGTGCGACCATCCTCCAACTGCTTGCCAGCAAA 171709 Query 48635 TATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGA 48694 || || || ||||| || | |||| || |||||||| ||||| |||||| Sbjct 171710 AATGAGACGTTGTTGGTCAGGCGGAATACCTTCCTTGTCCTGGATCTTCGCCTTTACATT 171769 Query 48695 ACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTAC 48754 | | | || |||| ||| ||||||| |||||||| ||||| || | || || || Sbjct 171770 GTCAATGGTGTCCGACGACTCAACCTCCAGAGTAATCGTCTTTCCTGTGAGGGTCTTGAC 171829 Query 48755 AAAAATCTGCAT 48766 || |||||||| Sbjct 171830 GAAGATCTGCAT 171841 Score = 107 bits (118), Expect = 1e-18 Identities = 152/211 (72%), Gaps = 2/211 (1%) Strand=Plus/Minus Query 48557 CACCAA-ATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGT 48615 |||||| ||| || || |||||| ||||| || || ||||| || | ||| | || | Sbjct 1022618 CACCAAGATGAAGGGTAGACTCTTTCTGAATGTTATAGTCAGAAAGCGTACGACCATCCT 1022559 Query 48616 CCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGC 48675 |||||||||| || ||||| |||| |||||||| || | |||| ||| || ||||| Sbjct 1022558 CCAACTGCTTTCCAGCAAAGATCAAACGCTGTTGGTCGGGAGGAATGCCTTCTTTGTCCT 1022499 Query 48676 TAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTT 48735 ||||||| || ||| | | || || || | ||| || || | || ||||| | Sbjct 1022498 GAATCTTTGCCTTGACATTGTCGATAGTGTCAGAAGACTCGACTTCAAGAGTGATCGTCT 1022439 Query 48736 TTCCCGTCAAAGTT-TTTACAAAAATCTGCA 48765 |||| ||||| ||| || ||||| ||||||| Sbjct 1022438 TTCCGGTCAATGTTCTTCACAAAGATCTGCA 1022408 Score = 104 bits (114), Expect = 2e-17 Identities = 138/192 (72%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 48575 CTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAA 48634 |||||| ||||||||||||||||| || | ||| | || ||||||||||| || ||||| Sbjct 171878 CTCTTTCTGAATATTGTAATCAGAAAGCGTGCGACCATCCTCCAACTGCTTGCCAGCAAA 171937 Query 48635 TATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGA 48694 || || || ||||| || | |||| || |||||||| || || || ||| Sbjct 171938 AATGAGACGTTGTTGGTCAGGCGGAATACCTTCCTTGTCCTGGATTTTCGCCTTAACATT 171997 Query 48695 ACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTAC 48754 | | || || |||| ||| ||||| | || ||||| |||||||| | || || || Sbjct 171998 GTCAATAGTGTCAGACGACTCAACCTCAAGAGTGATCGTCTTTCCCGTGAGTGTCTTGAC 172057 Query 48755 AAAAATCTGCAT 48766 || |||||||| Sbjct 172058 GAAGATCTGCAT 172069 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 380937456077013