Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lentinula_20edodes_20[genbank_20GCA_5F001562095.1_202016-02-16] 31 sequences; 46,106,741 total letters Query= NC_019491.1 Length=291144 Score E Sequences producing significant alignments: (Bits) Value seq29 178 2e-39 seq23 152 1e-31 >seq29 Length=5849119 Score = 178 bits (196), Expect = 2e-39 Identities = 382/567 (67%), Gaps = 7/567 (1%) Strand=Plus/Minus Query 48123 AGAGCATGCAGGCAAAGTCCCTGTGCAAGCCTTCGTCCCGGCTGATGAGCACGTTGGAGA 48182 |||| | |||||| ||||| | |||| || || || || ||||||||| |||| |||| Sbjct 5169120 AGAGAAGGCAGGCGAAGTCGGTATGCATACCCTCATCACGACTGATGAGCTCGTTTGAGA 5169061 Query 48183 A-GCAGAGACCAGGCATGACCCCCCTCTGTTTGAGCCAGAAAATTGCCGCGAAAGAGCCA 48241 | || || |||||||| | || | || || | ||| || || | |||||| |||||| Sbjct 5169060 ACGCCAAG-CCAGGCATTAATCCACGCTTCTTCATCCAAAAGATGGACGCGAAGGAGCCA 5169002 Query 48242 GAGAAGAAGATGCCCTCCACTGCCGCGAACGCGGTGAGCCTCTCTCCGAAAGAAGCGTTC 48301 |||||||| ||||| || || || || || || ||| | ||| |||||| | || Sbjct 5169001 GAGAAGAAAATGCCTTCAACAGCAGCAAAGGCTACGAGACGCTCGCCGAAAACCGAGTGT 5168942 Query 48302 TTGTCTGAGATCCAGGAAAGCGCCCAGTCTGCCTTCTTCTTGATGCATGGCATCGTCTCT 48361 | ||| ||||||| || ||||| || ||||| ||||||||| || || ||||| Sbjct 5168941 TCGTCACTGATCCAGTGCAGAGCCCACTCGGCCTTGCGCTTGATGCAAGGAATAGTCTCG 5168882 Query 48362 ATGGCCCGGAAGAGCTTCTTGCACTCACCTGCGTCCGCAACATAGGTAGTGAGCAGCTTT 48421 || || || || | | || | | ||| | || || || || Sbjct 5168881 ATAGCATCAAAAAGGAAATCACGTTCGACAGGGTCTTTGATGTATGTGTCGATGAGAAGA 5168822 Query 48422 GCGTACATCTCAGAGTGCACATTCTCTATAGCGATCTGGAACCCGTAGAAGGCCCTGGCC 48481 | ||| |||| ||||| | ||||| || |||||||||||||||||| | ||| Sbjct 5168821 GAGTAAGTCTCGGAGTGAATGTTCTCCATCATAATCTGGAACCCGTAGAAGCAACGTGCC 5168762 Query 48482 TCAAACACCTGCACTTCTGTGGAGAATCTCTCCAGCAGATTCTCATTGACTATCCCATCT 48541 ||| ||||| ||||| | ||||| | || || |||||||| ||||| || ||||| Sbjct 5168761 TCAGCGACCTGTACTTCGTTCGAGAAGCGTTCGAGAAGATTCTCGTTGACAATGCCATCA 5168702 Query 48542 GAAGCAGCAAAGAAGGCAAGGACATGTTTAAGGAAATGGCGCTCGTTGTGGGTGAGAGC- 48600 || || |||||||| || |||||| | | ||| || ||| ||| | || || Sbjct 5168701 GAGGCGGCAAAGAACGCGAGGACACGGGAGATGAAGAATCGTTCGCTGTCATTCAG-GCG 5168643 Query 48601 ---ATTCCAGCCCTGTACGTCTTTGCCCAGGTCCACTTCTTCCACAGTCCAGAAGGACGC 48657 |||||| | || | |||||| | |||| |||||| |||||||||| || || Sbjct 5168642 GTTGTTCCAGTCATGAAGGTCTTTTGATAAATCCATCTCTTCCGCAGTCCAGAAAGAGGC 5168583 Query 48658 GAGTGCTTTTTTGTACATGCCCCATAT 48684 || || |||||||| |||||| Sbjct 5168582 CTCGGCCTTCTTGTACATTTGCCATAT 5168556 >seq23 Length=3600692 Score = 152 bits (168), Expect = 1e-31 Identities = 362/543 (67%), Gaps = 7/543 (1%) Strand=Plus/Plus Query 48146 TGCAAGCCTTCGTCCCGGCTGATGAGCACGTTGGAGAAGCAGAGACCAGGCATGACCCCC 48205 || || ||||| || |||||||||||| |||| || | || |||||||| | || Sbjct 3498594 TGTAAACCTTCATCTCGGCTGATGAGCTCGTTTGAATAAGTTAGGCCAGGCATCAGGCCG 3498653 Query 48206 CTCTGTTTGAGCCAGAAAATTGCCGCGAAAGAGCCAGAGAAGAAGATGCCCTCCACTGCC 48265 | || || | ||||||||| | ||||| || ||||| || ||||| ||||| || || Sbjct 3498654 CGCTTCTTTAACCAGAAAATGGAAGCGAACGACCCAGAAAAAAAGATTCCCTCGACAGCA 3498713 Query 48266 GCGAACGCGGTGAGCCTCTCTCCGAAAGAAGCGTTC--TTGTCTGAGATCCAGGAAAGCG 48323 ||||| || | |||||| | |||| || ||| ||||| || ||||| || | Sbjct 3498714 GCGAATGCCACCAATCTCTCTGCAAAAG-TGC-TTCGTTTGTCAGATATCCATTTGAGGG 3498771 Query 48324 CCCAGTCTGCCTTCTTCTTGATGCATGGCATCGTCTCTATGGCCCGGAAGAGCTTCTTGC 48383 ||||||| || || ||||||||| || || || ||||| || |||||| | || Sbjct 3498772 CCCAGTCGGCTTTGCGCTTGATGCACGGTATTGTTTCTATTGCGTCGAAGAGATATGCGC 3498831 Query 48384 ACTCACCTGCGTCCGCAACATAGGTAGTGAGCAGCTTTGCGTACATCTCAGAGTGCACAT 48443 | | ||| || || ||| || ||| | ||| | ||||| || || | Sbjct 3498832 GTTGATTAAGATCCTTGACGTATGTATCGATAAGCAGAGAGTAAGTTTCAGAATGAACGT 3498891 Query 48444 TCTCTATAGCGATCTGGAACCCGTAGAAGGCCCTGGCCTCAAACACCTGCACTTCTGTGG 48503 | || || || |||||||| || ||| | |||||| | |||||||| | | Sbjct 3498892 TTTCCATCATTATTTGGAACCCATAAAAGTAGCGCGCCTCAGCTGCTTGCACTTCGTTTG 3498951 Query 48504 AGAATCTCTCCAGCAGATTCTCATTGACTATCCCATCTGAAGCAGCAAAGAAGGCAAGGA 48563 | || | ||||| |||||| || || || || || || || || |||||||| ||||||| Sbjct 3498952 AAAAGCGCTCCAACAGATTTTCGTTCACGATACCGTCAGAGGCGGCAAAGAATGCAAGGA 3499011 Query 48564 CATGTTTAAGGAAATGGCGCTCGTTGTGGGTGA---GAGCATTCCAGCCCTGTACGTCTT 48620 | || | | |||||| ||||||| | | | | | | |||||| | | || | Sbjct 3499012 CGTGGGTGATGAAATGACGCTCGTCATTGTTTAATCGCTCGTTCCAGTCGACAAGATCAT 3499071 Query 48621 TGCCCAGGTCCACTTCTTCCACAGTCCAGAAGGACGCGAGTGCTTTTTTGTACATGCCCC 48680 ||||| | |||||| |||||||| || || |||||| |||||||| || Sbjct 3499072 GAGTGAGGTCAATCTCTTCCGAGGTCCAGAACGATGCTTCTGCTTTCTTGTACATCTGCC 3499131 Query 48681 ATA 48683 ||| Sbjct 3499132 ATA 3499134 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 931532439031040