Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lentinula_20edodes_20[genbank_20GCA_5F001562095.1_202016-02-16] 31 sequences; 46,106,741 total letters Query= NC_019495.1 Length=290304 Score E Sequences producing significant alignments: (Bits) Value seq29 188 1e-42 seq23 132 9e-26 >seq29 Length=5849119 Score = 188 bits (208), Expect = 1e-42 Identities = 439/653 (67%), Gaps = 18/653 (3%) Strand=Plus/Plus Query 25477 ATATGGGAGATGTACAAGAAGGCTCAAAACTCAAACTGGACCGCCGAAGAGATTGATCTG 25536 |||||| | |||||||||||||| | ||| |||||| || |||||||| ||| | Sbjct 5168556 ATATGGCAAATGTACAAGAAGGCCGAGGCCTCTTTCTGGACTGCGGAAGAGATGGATTTA 5168615 Query 25537 GCCAAGGACATGGACGGCTGGTACGCTCTATCCAAAGACGAGC-AGCATTTTCTCAAGTA 25595 | || ||| | | | |||| || | || ||| ||| | | || ||| | Sbjct 5168616 TCAAAAGACCTTCATGACTGGAACAACCGCCTGAATGAC-AGCGAACGATTCTTCATCTC 5168674 Query 25596 C-GTGT--TGGCATTCTTTGCAGCCTCTGATGGTATAGTGAACGAGAATCTGTGCGAGAG 25652 | |||| | || |||||||| ||||||||||| || || ||||||||||| ||| | Sbjct 5168675 CCGTGTCCTCGCGTTCTTTGCCGCCTCTGATGGCATTGTCAACGAGAATCTTCTCGAACG 5168734 Query 25653 ATTCACCAGGGAAGTGCAGTACGTGGAGGCCAAGTGTTTCTACGGTTTCCAGATGGCCAT 25712 ||| | | ||||| ||| || ||||| || |||||||| |||||||| || Sbjct 5168735 CTTCTCGAACGAAGTACAGGTCGCTGAGGCACGTTGCTTCTACGGGTTCCAGATTATGAT 5168794 Query 25713 CGAAAATGTGCACTCTGAGGTGTATGCCAAGCTTCTGATG---ACGTACATTACAGACGT 25769 || || | ||||| ||| || | ||||| || || ||||| | |||| Sbjct 5168795 GGAGAACATTCACTCCGAGACTTACTCT---CTTCTCATCGACACATACATCAAAGACCC 5168851 Query 25770 CGCCGAGAGAGATCGGCTGTTTGGTGCCATCGAGCACATACCCAGCATCAAGAGGAAGGC 25829 | ||| | ||| || |||| ||| |||||| || || |||||||| | ||||| Sbjct 5168852 TGTCGAACGTGATTTCCTTTTTGATGCTATCGAGACTATTCCTTGCATCAAGCGCAAGGC 5168911 Query 25830 GCGGTGGGCCATGAAGTGGATCAACAGCCAGAGCGCTACGTTT--GGCGAGCGGCTGGTA 25887 |||||| || | ||||||| | || | || |||| |||||||| || ||| Sbjct 5168912 CGAGTGGGCTCTGCACTGGATCAGTGAC--GAACACTCGGTTTTCGGCGAGCGTCTCGTA 5168969 Query 25888 GCCTTTGCTGCTGTGGAGGGCATCTTTTTCAGCGGTTCGTTTGCGGCCATCTTCTGGCTC 25947 |||||||||||||| || ||||| || ||| || || || ||| ||||||| ||| | Sbjct 5168970 GCCTTTGCTGCTGTTGAAGGCATTTTCTTCTCTGGCTCCTTCGCGTCCATCTTTTGGATG 5169029 Query 25948 AAGCAGAAGGGGACCATGCCCGGGCTGTACTTTTCCAACGAGCTCATCAGCAGGGACGAG 26007 ||| || || ||||| || || || || |||||||||||||| | || ||| Sbjct 5169030 AAGAAGCGTGGATTAATGCCTGGCTTGGCGTTCTCAAACGAGCTCATCAGTCGTGATGAG 5169089 Query 26008 GGTCTCCACAGAGATTTTGCCTGCCTGCTCTACACGGGCCACTTGCTCCACAAACCTTCT 26067 ||| | || | || || |||||||| |||| || ||||| | | | ||| | Sbjct 5169090 GGTATGCATACCGACTTCGCCTGCCTTCTCTTCA---GCCACCTCCGTCGTCGTCCTCAT 5169146 Query 26068 CAAGAGACCGTCTACAGTATCATCAAAGAGGCTGTGGAGATCGAGAAGGAGTT 26120 | || ||||| | |||| |||||||| || || | |||||| | ||||| Sbjct 5169147 CCTGACACCGTTGAACGTATTATCAAAGAAGCAGTCGCTATCGAGCAAGAGTT 5169199 >seq23 Length=3600692 Score = 132 bits (146), Expect = 9e-26 Identities = 378/568 (67%), Gaps = 15/568 (3%) Strand=Plus/Minus Query 25478 TATGGGAGATGTACAAGAAGGCTCAAAACTCAAACTGGACCGCCGAAGAGATTGATCTGG 25537 ||||| ||||||||||||| || || || ||||||| | ||||||||||| || Sbjct 3499134 TATGGCAGATGTACAAGAAAGCAGAAGCATCGTTCTGGACCTCGGAAGAGATTGACCTCA 3499075 Query 25538 CCAAGGACATGGACGGCTGGTACGCTCTATC---CAAAGACGAGCAGCATTTTCTCAAGT 25594 | | || | | || |||| ||| | || ||| ||||||| ||||| ||| Sbjct 3499074 CTCATGATCTTGTCGACTGGAACGAGCGATTAAACAATGACGAGCGTCATTTCATCACCC 3499015 Query 25595 ACGTGTTGGCATTCTTTGCAGCCTCTGATGGTATAGTGAACGAGAATCTGTGCGAGAGAT 25654 |||| | ||||||||||| |||||||| ||||| |||||||| ||||||| ||| | | Sbjct 3499014 ACGTCCTTGCATTCTTTGCCGCCTCTGACGGTATCGTGAACGAAAATCTGTTGGAGCGCT 3498955 Query 25655 TCACCAGGGAAGTGCAGTACGTGGAGGCCAAGTGTTTCTACGGTTTCCAGATGGCCATCG 25714 | | | |||||||| | ||||| | || || || ||||| || || | Sbjct 3498954 TTTCAAACGAAGTGCAAGCAGCTGAGGCGCGCTACTTTTATGGGTTCCAAATAATGATGG 3498895 Query 25715 AAAATGTGCACTCTGAGGTGTATGCCAAGCTTCT-GATGACGTACATTACAGA-CGTCGC 25772 |||| || || ||||| || | |||| | ||| || ||| | | || | | Sbjct 3498894 AAAACGTTCATTCTGAAACTTACTCTCTGCTTATCGAT-ACATACGTCAAGGATCTTAAT 3498836 Query 25773 CGA-GAG-AGATCGGCTGTTTGGTGCCATCGAGCACATACCCAGCATCAAGAGGAAGGCG 25830 | | | | | || || || | || || || ||||| |||||||| | || || Sbjct 3498835 CAACGCGCATAT---CTCTTCGACGCAATAGAAACAATACCGTGCATCAAGCGCAAAGCC 3498779 Query 25831 CGGTGGGCCATGAAGTGGATCAACAGCCAGA-GCGCTACGTTTGGCGAGCGGCTGGTAGC 25889 |||||| | || ||||| | | | || | | || |||| ||| | |||| || Sbjct 3498778 GACTGGGCCCTCAAATGGAT-ATCTGACAAACGAAGCACTTTTGCAGAGAGATTGGTGGC 3498720 Query 25890 CTTTGCTGCTGTGGAGGGCATCTTTTTCAGCGGTTCGTTTGCGGCCATCTTCTGGCTCAA 25949 || |||||||| ||||| |||||||| || ||||| || |||| |||||| | || Sbjct 3498719 ATTCGCTGCTGTCGAGGGAATCTTTTTTTCTGGGTCGTTCGCTTCCATTTTCTGGTTAAA 3498660 Query 25950 GCAGAAGGGGACCATGCCCGGGCTGTACTT-TTCCAACGAGCTCATCAGCAGGGACGAGG 26008 | || || ||||| || || |||| ||| ||||||||||||||| | || || | Sbjct 3498659 GAAGCGCGGCCTGATGCCTGGCCT-AACTTATTCAAACGAGCTCATCAGCCGAGATGAAG 3498601 Query 26009 GTCTCCACAGAGATTTTGCCTGCCTGCT 26036 || | || | ||||| || || || || Sbjct 3498600 GTTTACATACCGATTTCGCGTGTCTCCT 3498573 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 928844440072640