Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lentinula_20edodes_20[genbank_20GCA_5F001562095.1_202016-02-16] 31 sequences; 46,106,741 total letters Query= NC_021247.1 Length=228750 Score E Sequences producing significant alignments: (Bits) Value seq23 141 1e-28 seq31 107 3e-18 seq2 104 3e-17 >seq23 Length=3600692 Score = 141 bits (156), Expect = 1e-28 Identities = 364/551 (66%), Gaps = 7/551 (1%) Strand=Plus/Plus Query 18157 ACACGCAAAATCAGTGTGTAAACCTTCATCTCTGGATATTAATTCGTTACTAAACGTTAA 18216 |||||| ||||| || |||||||||||||||| | || | ||||| | | |||| Sbjct 3498578 ACACGCGAAATCGGTATGTAAACCTTCATCTCGGCTGATGAGCTCGTTTGAATAAGTTAG 3498637 Query 18217 CCCGGGCATTATACCTCttttttttAGCCAAAATATCGATGCGAAACTACTAGAAAAGAA 18276 || ||||| | || | || |||| ||| || || || ||||| | |||||| || Sbjct 3498638 GCCAGGCATCAGGCCGCGCTTCTTTAACCAGAAAATGGAAGCGAACGACCCAGAAAAAAA 3498697 Query 18277 TATACCCTCAAC-GCACGCGAACGCTATTAATCTTTCAGCAAAACTGTATTTATTGCTCA 18335 || ||||| || ||| ||||| || | ||||| || |||||| || || || ||| Sbjct 3498698 GATTCCCTCGACAGCA-GCGAATGCCACCAATCTCTCTGCAAAAGTG-CTTCGTTTGTCA 3498755 Query 18336 G-TATCCATTTTTGTGCCCATTCTCCTTNNNNNNNNATACACGGTATACTCTCTATAGCA 18394 | ||||||||| | ||||| || ||| || |||||||| | ||||| || Sbjct 3498756 GATATCCATTTGAGGGCCCAGTCGGCTTTGCGCTTGATGCACGGTATTGTTTCTATTGCG 3498815 Query 18395 TTAAACAAATCATCTTTTTCTTTGGAATCTTTTATATAAGTGTCGATTAACAAAGAATAC 18454 | || | || | || || ||| || | || || ||||| | || ||| || Sbjct 3498816 TCGAAGAGATATGCGCGTTGATTAAGATCCTTGACGTATGTATCGATAAGCAGAGAGTAA 3498875 Query 18455 ATTTCAGAATGTATGCTTTCCATAGCTATCTGAAAACTATAAAACGATCTAGCCTCGGGA 18514 |||||||||| | | ||||||| ||| || || | |||||| | | ||||| | Sbjct 3498876 GTTTCAGAATGAACGTTTTCCATCATTATTTGGAACCCATAAAAGTAGCGCGCCTCAGCT 3498935 Query 18515 TATTGAATCTCGCTATAAAATCTTTCTACCAAATTCTCATTAACTATACCGTCAGCAGAT 18574 ||| | ||| | |||| | || | || ||| || || || |||||||||| | Sbjct 3498936 GCTTGCACTTCGTTTGAAAAGCGCTCCAACAGATTTTCGTTCACGATACCGTCAGAGGCG 3498995 Query 18575 GCGAAAAATGCCAAAACATATTTAATGAAATGTTTTTCATTATCCTTGA---GATTGTTC 18631 || || ||||| | || | | |||||||| || | || || | | | |||| Sbjct 3498996 GCAAAGAATGCAAGGACGTGGGTGATGAAATGACGCTCGTCATTGTTTAATCGCTCGTTC 3499055 Query 18632 CATTCATCTATATCTTTTGATAGATCAACTTCTTCCGATGTCCAAAAAGATGATTCGGCC 18691 || || | | ||| | | || |||| |||||||| ||||| || |||| ||| || Sbjct 3499056 CAGTCGACAAGATCATGAGTGAGGTCAATCTCTTCCGAGGTCCAGAACGATGCTTCTGCT 3499115 Query 18692 TGTTTGTACAT 18702 | |||||||| Sbjct 3499116 TTCTTGTACAT 3499126 >seq31 Length=1678028 Score = 107 bits (118), Expect = 3e-18 Identities = 358/555 (65%), Gaps = 15/555 (3%) Strand=Plus/Plus Query 18158 CACGCAAAATCAGTGTGTAAACCTTCATCTCTGGATATTAATTCGTTACTAAACGTTAAC 18217 || ||||| || ||||| | ||||| || | || | |||||| ||| || ||| Sbjct 618616 CATGCAAAGTCGGTGTGCATTCCTTCGTCACGACTGATAAGTTCGTTTGAAAAGGTCAAC 618675 Query 18218 CCGGGCATTATACCTCttttttttAGCCAAAATATCGATGCGAAACTACTAGAAAAGAAT 18277 || |||| || || | |||||| | ||||||||| | |||||| | || || || Sbjct 618676 CCAGGCAATAATCCACGTTTTTTGATCCAAAATATGCACGCGAAAGATCCGGAGAAAAAA 618735 Query 18278 ATACCCTCAACGCACGCGAACGCTATTAATCTTTCAGCAAAACTGTATTTATTG-CTCAG 18336 || || || | | | ||| || | | || ||| |||||| | || || | || | Sbjct 618736 ATTCCTTCGATGGCTGAGAATGCAACGAGTCGTTCCGCAAAAGTAACTTGATCGTCTTCG 618795 Query 18337 TATCCATTTTTGTGCCCATTCTCCTTNNNNNNNNATACACGGTATACTCTCTATAGCATT 18396 |||||| || |||||||| | ||| || || || || | || |||| | | Sbjct 618796 -ATCCATCTTAGTGCCCATGCCGCTTTTTGTTTAATGCAAGGAATCGTTTCGATAGAACT 618854 Query 18397 AAACAA--ATCATCTTTTTCTTTGGAATCTTTTATATAAGTGTCGATTAACAAAGAATAC 18454 ||||| || ||| || | | ||||| ||||| || | || | ||||||||| Sbjct 618855 GAACAAGAATGATCGTTCGAATGG--ATCTTGGATATACGTTTGAATCAGCAAAGAATAA 618912 Query 18455 ATTTCAGAATGTATGCTTTCCATAGCTATCTGAAAACTATAAAACGATCTAGCCTCGGGA 18514 |||| ||||| ||| ||||||| | ||| || | ||| || |||| |||||| | Sbjct 618913 GTTTCTGAATGGATGTTTTCCATCATTGACTGGAATCCATAGAAGGATCGAGCCTCAGCG 618972 Query 18515 TATTGAATCTCGCTATAAAATCTTTCTACCAAATTCTCATTAACTATACCGTCAGCAGAT 18574 ||||| || ||| | || | ||| || || || || |||||||| | | Sbjct 618973 ACCTGAATTTCACTAGAGAAGTGACGGATCAAGTTTTCGTTTACAATACCGTCGGACGCA 619032 Query 18575 GCGAAAAATGCCAAAACATATTTAATGAAA------TGTTTTTCATTATCCTTGAGATTG 18628 ||||||||||| | ||| ||||| | ||| | || | || | ||| Sbjct 619033 GCGAAAAATGCTAGCACACGAGCCGTGAAAAAGCGCTCGTTTGCGTT---CATGCGGTTG 619089 Query 18629 TTCCATTCATCTATATCTTTTGATAGATCAACTTCTTCCGATGTCCAAAAAGATGATTCG 18688 ||||| || | | ||| ||||| || || | |||||||| ||||| || || | || Sbjct 619090 TTCCAGTCGTGCAAATCGTTTGAAAGGTCTATTTCTTCCGTAGTCCAGAAGGAAGCCTCA 619149 Query 18689 GCCTGTTTGTACATT 18703 || | ||||||| || Sbjct 619150 GCTTTTTTGTACCTT 619164 >seq2 Length=1585523 Score = 104 bits (114), Expect = 3e-17 Identities = 146/205 (71%), Gaps = 0/205 (0%) Strand=Plus/Plus Query 155822 AATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTC 155881 |||||| || ||| | || || ||||| ||||| || || || || || ||||| || Sbjct 1022180 AATGCAGATCTTTGTCAAGACTTTGACCGGAAAGACCATCACCTTGGAGGTCGAGTCGTC 1022239 Query 155882 TGATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACA 155941 ||||| ||| || ||||| || || || ||||| || || || ||||| || || Sbjct 1022240 TGATACCATTGACAATGTGAAGGCAAAGATCCAGGATAAGGAGGGTATCCCTCCTGACCA 1022299 Query 155942 ACAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAA 156001 |||| | | || | ||| || |||||||| |||||| | | ||| | || |||||||| Sbjct 1022300 ACAACGTCTTATCTTTGCTGGAAAGCAGCTAGAAGATGGCCGCACTCTTTCGGATTATAA 1022359 Query 156002 TATATCCAAAGAGGCGACGCTTCAT 156026 ||| ||||| |||| |||||| Sbjct 1022360 TATCCAAAAAGAATCGACTCTTCAT 1022384 Score = 93.3 bits (102), Expect = 6e-14 Identities = 114/156 (73%), Gaps = 0/156 (0%) Strand=Plus/Minus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 |||||||| ||| |||| || | || || ||||| || || || || ||||| ||| Sbjct 172297 ATGCAAATCTTTGTTAAGACCCTCACGGGCAAAACGATCACTTTGGAGGTCGAGTCTTCA 172238 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 || | || |||||||| || ||||| ||||| || ||||| ||||| || ||| Sbjct 172237 GACACGATCGACAACGTGAAGGCCAAGATACAGGATAAGGAGGGCATTCCTCCCGATCAA 172178 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGAT 155978 ||| || | || | ||||| ||||||||||||||| Sbjct 172177 CAACGACTAATCTTCGCCGGCAAGCAGCTCGAAGAT 172142 Score = 86.0 bits (94), Expect = 9e-12 Identities = 142/204 (70%), Gaps = 1/204 (0%) Strand=Plus/Plus Query 155824 TGCAAATATTTATTAA-AACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 |||| || ||| | || ||||||||| ||||| || || || | |||||||| |||| Sbjct 1022408 TGCAGATCTTTGTGAAGAACATTGACCGGAAAGACGATCACTCTTGAAGTCGAGTCTTCT 1022467 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 || | ||| || || || || || || || ||||||||||| ||||| || ||| Sbjct 1022468 GACACTATCGACAATGTCAAGGCAAAGATTCAGGACAAAGAAGGCATTCCTCCCGACCAA 1022527 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 || | ||||| | ||| || |||||| | || ||| | || | || || ||||| Sbjct 1022528 CAGCGTTTGATCTTTGCTGGAAAGCAGTTGGAGGATGGTCGTACGCTTTCTGACTATAAC 1022587 Query 156003 ATATCCAAAGAGGCGACGCTTCAT 156026 || |||||| | || |||||| Sbjct 1022588 ATTCAGAAAGAGTCTACCCTTCAT 1022611 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 731871716399600