Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lentinula_20edodes_20[genbank_20GCA_5F001562095.1_202016-02-16] 31 sequences; 46,106,741 total letters Query= NC_021248.1 Length=307691 Score E Sequences producing significant alignments: (Bits) Value seq2 104 5e-17 >seq2 Length=1585523 Score = 104 bits (114), Expect = 5e-17 Identities = 142/197 (72%), Gaps = 1/197 (1%) Strand=Plus/Minus Query 192340 GTAGCCTCTTTAGAGATATTATAATCAGATAATGTTCGTTCATCATCCAATTGTTTACCA 192399 |||| |||||| || ||||| ||||| | || || |||| ||||| || || ||| Sbjct 1022604 GTAGACTCTTTCTGAATGTTATAGTCAGAAAGCGTACGACCATCCTCCAACTGCTTTCCA 1022545 Query 192400 GCAAAGATTAATCTCTGTTGATCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTT 192459 |||||||| || | |||||| || || || || |||||||| || || || || || Sbjct 1022544 GCAAAGATCAAACGCTGTTGGTCGGGAGGAATGCCTTCTTTGTCCTGAATCTTTGCCTTG 1022485 Query 192460 ACATTAGTTATAGAATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTT 192519 ||||| |||| || || || || ||||| ||||| || || || || || |||||| Sbjct 1022484 ACATTGTCGATAGTGTCAGAAGACTCGACTTCAAGAGTGATCGTCTTTCCGGTCAATGTT 1022425 Query 192520 -TTAATAAATATCTGCA 192535 || | ||| ||||||| Sbjct 1022424 CTTCACAAAGATCTGCA 1022408 Score = 86.0 bits (94), Expect = 1e-11 Identities = 142/205 (69%), Gaps = 0/205 (0%) Strand=Plus/Minus Query 192333 ATGTAAAGTAGCCTCTTTAGAGATATTATAATCAGATAATGTTCGTTCATCATCCAATTG 192392 ||| | ||| | ||||| |||||||||||| || | || || |||| || | || Sbjct 1022384 ATGAAGAGTCGATTCTTTTTGGATATTATAATCCGAAAGAGTGCGGCCATCTTCTAGCTG 1022325 Query 192393 TTTACCAGCAAAGATTAATCTCTGTTGATCAGGTGGTATTCCTTCTTTATCTTGTATTTT 192452 || ||||||||||| | | ||||| ||||| || || || || ||||| || || || Sbjct 1022324 CTTTCCAGCAAAGATAAGACGTTGTTGGTCAGGAGGGATACCCTCCTTATCCTGGATCTT 1022265 Query 192453 ATTTTTTACATTAGTTATAGAATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGT 192512 || ||||| || | ||| ||||| || || || | || ||||| || || || Sbjct 1022264 TGCCTTCACATTGTCAATGGTATCAGACGACTCGACCTCCAAGGTGATGGTCTTTCCGGT 1022205 Query 192513 TAATGTTTTAATAAATATCTGCATT 192537 || || || | ||| ||||||||| Sbjct 1022204 CAAAGTCTTGACAAAGATCTGCATT 1022180 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 984479608976850