Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lentinula_20edodes_20[genbank_20GCA_5F001562095.1_202016-02-16] 31 sequences; 46,106,741 total letters Query= NC_021249.1 Length=282895 Score E Sequences producing significant alignments: (Bits) Value seq2 104 4e-17 >seq2 Length=1585523 Score = 104 bits (114), Expect = 4e-17 Identities = 161/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899 ||||| |||| ||| || | || | || | || | |||||| |||||| ||||| Sbjct 171840 ATACCTCCTCGAAGACGAAGGACAAGGTGGAGGGTTGACTCTTTCTGAATATTGTAATCA 171899 Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959 || | | || | || ||||| || || ||||||||||| | | ||||||||||| Sbjct 171900 GAAAGCGTGCGACCATCCTCCAACTGCTTGCCAGCAAAAATGAGACGTTGTTGGTCAGGC 171959 Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019 || || ||||| || || || ||||| || ||||| ||||| || ||||| || Sbjct 171960 GGAATACCTTCCTTGTCCTGGATTTTCGCCTTAACATTGTCAATAGTGTCAGACGACTCA 172019 Query 172020 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 || || ||||| || || || || || | ||| || | ||| |||||||| Sbjct 172020 ACCTCAAGAGTGATCGTCTTTCCCGTGAGTGTCTTGACGAAGATCTGCAT 172069 Score = 91.5 bits (100), Expect = 3e-13 Identities = 130/183 (71%), Gaps = 0/183 (0%) Strand=Plus/Plus Query 171887 AATATTATAATCTGATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCT 171946 |||||| ||||| || | | || | || ||||| || || ||||||||||| | | Sbjct 171659 AATATTGTAATCAGAAAGCGTGCGACCATCCTCCAACTGCTTGCCAGCAAAAATGAGACG 171718 Query 171947 CTGTTGGTCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGT 172006 ||||||||||| || || ||||| || || || || || |||||||| || || Sbjct 171719 TTGTTGGTCAGGCGGAATACCTTCCTTGTCCTGGATCTTCGCCTTTACATTGTCAATGGT 171778 Query 172007 ATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTG 172066 || ||||| || || || |||||||| || || || || | || || | ||| ||||| Sbjct 171779 GTCCGACGACTCAACCTCCAGAGTAATCGTCTTTCCTGTGAGGGTCTTGACGAAGATCTG 171838 Query 172067 CAT 172069 ||| Sbjct 171839 CAT 171841 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 905135649259800